PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00104633001

Common Name

GSBRNA2T00104633001, LOC106415582

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

CPP

Protein Properties

Length: 567aa MW: 60364.2 Da PI: 7.4882

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00104633001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	44.8	2.4e-14	112	151	1	41
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++kk+CnCk s+Clk+YCeCfa+g++C+ C+C +C+N+ + GSBRNA2T00104633001 112 QKKKHCNCKLSRCLKLYCECFASGTYCDG-CNCVNCFNNAD 151 589************************.******987 PP
2	TCR	51.3	2.3e-16	197	235	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 k++kgC+Ckks ClkkYCeCf+a++ Cse+C+C +CkN GSBRNA2T00104633001 197 KHNKGCHCKKSGCLKKYCECFQANVLCSENCRCLGCKNF 235 589***********************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.3E-16	112	152	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	35.816	113	237	IPR005172	CRC domain
Pfam	PF03638	1.5E-10	114	149	IPR005172	CRC domain
SMART	SM01114	1.1E-18	197	238	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.2E-12	200	235	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 567 aa Download sequence Send to blast
MGEGGGGGGD FPPKKDGVSD ESCFPAKKPA TQLDFTGGSD EHSESHTVVT PSVTSPVTTT 60 PSRLHPVARP TLPVVTSQSQ ILNAPISLPK QPESPESRAR PPIVEGRDGT PQKKKHCNCK 120 LSRCLKLYCE CFASGTYCDG CNCVNCFNNA DNEPARRDAV EATLDRNPNA FRPKIASSPH 180 GARDKREEIG EAVLLGKHNK GCHCKKSGCL KKYCECFQAN VLCSENCRCL GCKNFDGSEE 240 RQALFHGEHA SNMAYLQQAA NAAITGAVGS SGFAPFPAPK RRKGQDISFN QATNDSSMHR 300 LGQFQQASNG RTSGSTSGTS PANVARASGN SSAPSKFVYR SLLAEIIQPQ DVNALCSVLV 360 AVAGEAAKTS TDRRNETEKR VEDQTETSLA SCNSQGNKDA SDVEMIATDG NQADGSNGRP 420 LSPATLALMC DEQDSLFMVA AAEPSGSVDT GGCGTNPQGQ SETYAEKERL VLTKFRDCLT 480 RLISYADFKE SKCSYLARSH IQSPSTAPTV TVKTENGIQQ RPPVVNGASL TTTQPTLNKP 540 QLLQPTTTTS THHPHKPPAP EENKDL*

Sequence ? help Back to Top

Protein Sequence Length: 567 aa Download sequence Send to blast

MGEGGGGGGD FPPKKDGVSD ESCFPAKKPA TQLDFTGGSD EHSESHTVVT PSVTSPVTTT  60
PSRLHPVARP TLPVVTSQSQ ILNAPISLPK QPESPESRAR PPIVEGRDGT PQKKKHCNCK  120
LSRCLKLYCE CFASGTYCDG CNCVNCFNNA DNEPARRDAV EATLDRNPNA FRPKIASSPH  180
GARDKREEIG EAVLLGKHNK GCHCKKSGCL KKYCECFQAN VLCSENCRCL GCKNFDGSEE  240
RQALFHGEHA SNMAYLQQAA NAAITGAVGS SGFAPFPAPK RRKGQDISFN QATNDSSMHR  300
LGQFQQASNG RTSGSTSGTS PANVARASGN SSAPSKFVYR SLLAEIIQPQ DVNALCSVLV  360
AVAGEAAKTS TDRRNETEKR VEDQTETSLA SCNSQGNKDA SDVEMIATDG NQADGSNGRP  420
LSPATLALMC DEQDSLFMVA AAEPSGSVDT GGCGTNPQGQ SETYAEKERL VLTKFRDCLT  480
RLISYADFKE SKCSYLARSH IQSPSTAPTV TVKTENGIQQ RPPVVNGASL TTTQPTLNKP  540
QLLQPTTTTS THHPHKPPAP EENKDL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	3e-32	114	246	11	132	Protein lin-54 homolog
5fd3_B	3e-32	114	246	11	132	Protein lin-54 homolog
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269\|PubMed:18057042}.

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00104633001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013711787.1	0.0	protein tesmin/TSO1-like CXC 5
Swissprot	Q9SZD1	0.0	TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBL	A0A3N6TNB9	0.0	A0A3N6TNB9_BRACR; Uncharacterized protein
STRING	Bra010348.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1783	28	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	0.0	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Entrez Gene	106415582

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]