PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00104541001
Common NameGSBRNA2T00104541001, LOC106412251
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 329aa    MW: 37246.7 Da    PI: 4.5179
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00104541001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-18117166255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +++GVr+++ +g+++AeIrdp +   r+r++lg+f taeeAa  +++a+ +l+g
  GSBRNA2T00104541001 117 KFRGVRRRP-WGKYAAEIRDPEQ---RRRIWLGTFSTAEEAAMVYDNAAIRLRG 166
                          89*******.**********743...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.9E-29116174IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-21117175IPR016177DNA-binding domain
SMARTSM003801.2E-39117180IPR001471AP2/ERF domain
PROSITE profilePS5103222.998117174IPR001471AP2/ERF domain
PfamPF008471.6E-11117166IPR001471AP2/ERF domain
CDDcd000182.76E-32117173No hitNo description
PRINTSPR003671.4E-9118129IPR001471AP2/ERF domain
PRINTSPR003671.4E-9140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MSMDEYMELR SVKYTEHKTV IKKYTKKLPV ENKKKISTGR DSARLVRLCV MDRDATDSSS  60
DDEEFLFPRR RVKRLINEIR VEPSSSSGEV SAGKTLTAVD PPLQKVSVSG VEQSPRKFRG  120
VRRRPWGKYA AEIRDPEQRR RIWLGTFSTA EEAAMVYDNA AIRLRGPDAL TNFTVPTEPE  180
PEPEPVRNIS VSLTSESMDD SHHLLSPTSV LNYQISELTD EPIKPVKQEF PEREPISWSV  240
GEDISSNTDD SFPLDIPFLD KYFNESLPDI SIFDQSMSTI ESSDKDFFNG LMFFDDNIGG  300
ENYYPDIKEI GSVLNDLDES LISDLLAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-21116173159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-21116173462ATERF1
3gcc_A7e-21116173462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00104541001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013708611.10.0ethylene-responsive transcription factor CRF4
SwissprotQ9SUE31e-152CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A3P6FT060.0A0A3P6FT06_BRAOL; Uncharacterized protein
STRINGBo8g053000.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-147cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  4. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]