PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00104068001

Common Name

GSBRNA2T00104068001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HB-other

Protein Properties

Length: 292aa MW: 32529.1 Da PI: 9.7311

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00104068001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.6	2.4e-09	229	276	6	53
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 + +k +e+Le+++++++ p+ + + + ++L+ r+V WF rRa GSBRNA2T00104068001 229 RVKKAHIETLEKVYRRSKRPTNAVVSSIVQVTNLPRRRVLKWFEDRRA 276 567899*****************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.139	221	281	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-9	226	286	IPR009057	Homeodomain-like
SMART	SM00389	2.4E-4	227	285	IPR001356	Homeobox domain
Pfam	PF00046	8.8E-7	229	277	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.9E-9	229	288	IPR009057	Homeodomain-like
CDD	cd00086	1.78E-6	232	276	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MIKAMAVALS SPGVAFRLSA ATRVLFPNQS ASPFLLSLPT HRTSRSVLVF GRGKNRKGFV 60 SSSSSSPKKN KKKSFGGGEE AEEDDPFEAL FNLLEEDLNN DKSSIDDEEI SEEDLDRLAA 120 ELAENWQLRR LAYALKAGRR KTSIKNLAAE LCLDRSYVLE LLRDPPPKLL MLSATLPDEK 180 PPVAAPENSS PPDPMESSSA EDAVEVKPVE KVKEEAVHVM QQRWSAQKRV KKAHIETLEK 240 VYRRSKRPTN AVVSSIVQVT NLPRRRVLKW FEDRRAEDGV PEKRAPYQAP V*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.11340	0.0	leaf

Functional Description ? help Back to Top
Source	Description
UniProt	May modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250\|UniProtKB:Q70Z19, ECO:0000269\|PubMed:15923348, ECO:0000269\|PubMed:19175769, ECO:0000269\|PubMed:20836879, ECO:0000269\|PubMed:21564353}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00104068001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Constitutively expressed in healthy plants but repressed in response to infection by necrotrophic fungi (PubMed:15923348). Repressed by drought and abscisic acid (ABA) (PubMed:19175769). {ECO:0000269\|PubMed:15923348, ECO:0000269\|PubMed:19175769}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT002017	1e-162	BT002017.1 Arabidopsis thaliana putative protein (At5g11270) mRNA, complete cds.
GenBank	BT008743	1e-162	BT008743.1 Arabidopsis thaliana At5g11270 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013687401.1	0.0	protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3-like
Swissprot	Q8H0V5	1e-102	OCP3_ARATH; Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBL	A0A3P6E1N7	1e-178	A0A3P6E1N7_BRAOL; Uncharacterized protein
TrEMBL	M4CXM8	1e-178	M4CXM8_BRARP; Uncharacterized protein
STRING	Bra008975.1-P	1e-179	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12077	26	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11270.1	1e-92	overexpressor of cationic peroxidase 3

Publications ? help Back to Top
García-Andrade J,Ramírez V,López A,Vera P Mediated plastid RNA editing in plant immunity. PLoS Pathog., 2013. 9(10): p. e1003713 [PMID:24204264] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gamir J,Pastor V,Kaever A,Cerezo M,Flors V Targeting novel chemical and constitutive primed metabolites against Plectosphaerella cucumerina. Plant J., 2014. 78(2): p. 227-40 [PMID:24506441] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]