PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00103415001 | ||||||||
Common Name | GSBRNA2T00103415001, LOC106402460 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 716aa MW: 78158.9 Da PI: 6.7469 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.7 | 1.1e-19 | 35 | 90 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q+++Le+ F+++++p+ ++r +L+++lgL rq+k+WFqNrR++ k GSBRNA2T00103415001 35 KKRYHRHTAQQIQRLESSFKECPHPDDKQRNQLSRELGLAPRQIKFWFQNRRTQLK 90 688999**********************************************9877 PP | |||||||
2 | START | 147.1 | 1.6e-46 | 224 | 445 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....k 78 +a++a++el+++ +ep+W++ e+++ + f++s++ ++ea+r sg+v+m++++lv ++d +W e ++ + GSBRNA2T00103415001 224 IALTAMEELLRLFNTNEPLWTRGDggrEILDLGSYENLFPRSGNrgknhnVRTEASRSSGIVFMNAMTLVDMFMDGV-KWGELFPcivaS 312 68999*****************999988888888888898888899999999*************************.**********9* PP EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS START 79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161 +tl+v+ssg gal+lm+ e+++lsplv+ R+f +Ry++ ++g+w++v vS +q++++ss++ + +pSg+li++++ g+ GSBRNA2T00103415001 313 SKTLAVVSSGmggtheGALHLMYEEMAVLSPLVAtREFCELRYCQMIEQGSWIVVNVSYHLPQFVSQSSHSYK---FPSGCLIQDMPSGY 399 *****************************************************************98666666...************** PP EEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 162 skvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 skvtwvehv+ +++ h+l+r ++++g+a+ga +wv tlqr ce+ GSBRNA2T00103415001 400 SKVTWVEHVETEEKEQtHELYREVIHKGIAFGAERWVTTLQRMCER 445 ***********998766***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.43E-20 | 18 | 92 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.4E-22 | 21 | 94 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.01 | 32 | 92 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.1E-19 | 33 | 96 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.2E-17 | 35 | 90 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.02E-19 | 35 | 93 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 67 | 90 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 45.26 | 214 | 448 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.88E-32 | 215 | 447 | No hit | No description |
CDD | cd08875 | 3.76E-100 | 218 | 444 | No hit | No description |
SMART | SM00234 | 7.4E-42 | 223 | 445 | IPR002913 | START domain |
Pfam | PF01852 | 1.0E-39 | 224 | 445 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 7.6E-6 | 280 | 442 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 5.08E-19 | 466 | 702 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 716 aa Download sequence Send to blast |
MSFVGGVGGS GSGGGDGGGG SGSQHHDGSE TDKKKKRYHR HTAQQIQRLE SSFKECPHPD 60 DKQRNQLSRE LGLAPRQIKF WFQNRRTQLK AQHERADNNA LKAENDKIRC ENIAIREAIK 120 HAICPNCGSP PVNEDPYFDE HKLRIENAHL RDDLERMSTV ASKYMGRPIS SHLSTLHPLH 180 ISPLDLSMTG PSLDFDLLPG SSMHSQPNNL ATISDMDKPL MNDIALTAME ELLRLFNTNE 240 PLWTRGDGGR EILDLGSYEN LFPRSGNRGK NHNVRTEASR SSGIVFMNAM TLVDMFMDGV 300 KWGELFPCIV ASSKTLAVVS SGMGGTHEGA LHLMYEEMAV LSPLVATREF CELRYCQMIE 360 QGSWIVVNVS YHLPQFVSQS SHSYKFPSGC LIQDMPSGYS KVTWVEHVET EEKEQTHELY 420 REVIHKGIAF GAERWVTTLQ RMCERFASLL APSTSSRDLG GVIPSPEGKR SMMRLAHRMV 480 SNYCLSVSRS NNTHSTVVAE LNEVGVRVTA HKSPEPNGTI LCAATTFWLP NSPQSVFNFL 540 KDERTRPQWD VLSNRNAVQE VAHIANGSHP GCCISVLRAS NASQSQSNNM LILQETSIDS 600 SGALVVYSPV DLPALNIAMS GDDTSYIPLL SSGFAISPDG NHSSSTTEQG GGASTSSGFG 660 GGGSLITVGF QIMVSNLPSA KLNMESVETV NNLIGTTVHQ IKTGLNNCPS GSTTA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 9 | 20 | SGSGGGDGGGGS |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During embryo development, expressed in all cells at the 4- and 16-cell embryo stages. Expression is restricted to the protoderm from the globular stage onward. {ECO:0000269|PubMed:25564655}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in apical meristems and young epidermal tissue including trichomes and stipules. Expressed in lateral root tips, the L1 layer of apical inflorescence meristems and early flower primordia, carpel and petal epidermis, stigma papillae, ovule primordia, nucellus and embryo. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00103415001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ182489 | 0.0 | DQ182489.1 Brassica napus baby boom interacting protein 1B mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013698656.1 | 0.0 | homeobox-leucine zipper protein HDG11 | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | A0A3P6GYP5 | 0.0 | A0A3P6GYP5_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g116760.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3004 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |
Link Out ? help Back to Top | |
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Entrez Gene | 106402460 |