PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00103197001
Common NameGSBRNA2T00103197001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 184aa    MW: 20079.3 Da    PI: 5.9262
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00103197001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.5e-182171155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         s y+GVr +k +g+Wv+eIr+p +   + r++lg+f t+e+Aa a++ a+  ++g
  GSBRNA2T00103197001 21 SVYRGVRKRK-WGKWVSEIREPGT---KNRIWLGSFETPEMAATAYDVAAFHFRG 71
                         78*****999.**********833...59*********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.9E-222180IPR016177DNA-binding domain
PfamPF008471.7E-112171IPR001471AP2/ERF domain
CDDcd000182.40E-312181No hitNo description
Gene3DG3DSA:3.30.730.101.2E-312280IPR001471AP2/ERF domain
SMARTSM003801.5E-372285IPR001471AP2/ERF domain
PROSITE profilePS5103223.2482279IPR001471AP2/ERF domain
PRINTSPR003671.6E-122334IPR001471AP2/ERF domain
PRINTSPR003671.6E-126181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MSGLSNSSNN ARYDGQAGIP SVYRGVRKRK WGKWVSEIRE PGTKNRIWLG SFETPEMAAT  60
AYDVAAFHFR GGEARLNFPE LVGSLPRPAD SSSDSIRMAA HEAALCLRTE PVESDMHVDT  120
SSSSNAGPTM VRLSPREIQA INESTLGSPT MSMHSTDDYS MGFANHMGMS AWDTYHTDSL  180
WDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-172384668ATERF1
3gcc_A1e-172384668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00103197001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592444.11e-133PREDICTED: ethylene-responsive transcription factor ERF021
RefseqXP_013702837.11e-133ethylene-responsive transcription factor ERF021-like
SwissprotQ9C9I29e-98ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A0D3CZV41e-131A0A0D3CZV4_BRAOL; Uncharacterized protein
TrEMBLA0A3P6HDX31e-131A0A3P6HDX3_BRAOL; Uncharacterized protein
STRINGBo6g113020.11e-132(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-100ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]