PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00103149001
Common NameGSBRNA2T00103149001, LOC106402499, MYBL2-1
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 197aa    MW: 22320.4 Da    PI: 10.1038
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00103149001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.51e-153679348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +++++Ed+l+++++++lG++ W++Ia +++ gRt+++++ +w +yl
  GSBRNA2T00103149001 36 NFSKDEDDLILKLHALLGNR-WSLIAGRLP-GRTDNEVRIHWETYL 79
                         79******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-152189IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-202683IPR009057Homeodomain-like
PROSITE profilePS5129423.5092983IPR017930Myb domain
SMARTSM007172.3E-143381IPR001005SANT/Myb domain
CDDcd001675.84E-123679No hitNo description
PfamPF002491.7E-143679IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010023Biological Processproanthocyanidin biosynthetic process
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MNKISHGALS RPSGMLHRAK RYRGRKYAKP ELKQSNFSKD EDDLILKLHA LLGNRWSLIA  60
GRLPGRTDNE VRIHWETYLE KKLMKMGIDP TNHRLYHHTN YTSRRYINAS YKKHETDIIS  120
DQSSSVSESC NMTLLPVSST KFSKDNATAG HNWLPDLNIG LVPMKTVTSL PVCSLQEPSE  180
SSNHGSTSQE TLLLFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-14148339108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.101970.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00103149001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN3790950.0JN379095.1 Brassica napus myb-like transcription factor 2 (MYBL2-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013698705.11e-145myb-related protein 308
TrEMBLI6T5N51e-144I6T5N5_BRANA; Myb-like transcription factor 2
STRINGBo6g112670.11e-133(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71030.12e-85MYB-like 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]