PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00103134001
Common NameGSBRNA2T00103134001, LOC106404861
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 210aa    MW: 23772 Da    PI: 9.3421
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00103134001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.53e-2070125156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rrk+ ++tk+q ++Lee F +n+++++++++eLA+ l+L++rqV vWFqNrRa+ k
  GSBRNA2T00103134001  70 RRKKLRLTKDQSHILEESFIQNHTLTHKQKQELATFLKLSQRQVEVWFQNRRARSK 125
                          79999*************************************************98 PP
2HD-ZIP_I/II106.61.9e-3471159190
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rl+k+q+++LEesF ++++L++++K+ela+ L+l++rqv+vWFqnrRAR k+k++E+++e+Lk+ + +lke+n++L+keveeLr +
  GSBRNA2T00103134001  71 RKKLRLTKDQSHILEESFIQNHTLTHKQKQELATFLKLSQRQVEVWFQNRRARSKLKHTEMECEYLKKLFGSLKEQNRQLQKEVEELR-A 159
                          69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.45E-2054126IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.7E-2058125IPR009057Homeodomain-like
PROSITE profilePS5007118.12367127IPR001356Homeobox domain
SMARTSM003893.4E-1869131IPR001356Homeobox domain
CDDcd000861.88E-1670128No hitNo description
PfamPF000461.5E-1770125IPR001356Homeobox domain
PROSITE patternPS000270102125IPR017970Homeobox, conserved site
SMARTSM003405.4E-14127170IPR003106Leucine zipper, homeobox-associated
PfamPF021836.9E-7127161IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MAVSPNSSFL ELTISIPSFS PSPSLPSSSD HMVRDLDINQ TPKMEKDREW IMISATPHVN  60
DDDGNSGGRR RKKLRLTKDQ SHILEESFIQ NHTLTHKQKQ ELATFLKLSQ RQVEVWFQNR  120
RARSKLKHTE MECEYLKKLF GSLKEQNRQL QKEVEELRAL KPVSASVLTM CPRCERVTVA  180
ADNGSNAVEE GTALRSQSRM TISSSSTLC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16775GRRRKKLRL
26874RRRKKLR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00226DAPTransfer from AT1G70920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00103134001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590457.11e-155PREDICTED: homeobox-leucine zipper protein ATHB-X-like
RefseqXP_013700971.11e-155homeobox-leucine zipper protein ATHB-X
SwissprotQ8GXM71e-102ATHBX_ARATH; Homeobox-leucine zipper protein ATHB-X
TrEMBLA0A0D3CZQ91e-153A0A0D3CZQ9_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GD831e-153A0A3P6GD83_BRAOL; Uncharacterized protein
STRINGBo6g112570.11e-154(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133801624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70920.11e-92homeobox-leucine zipper protein 18
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]