PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00102913001

Common Name

GSBRNA2T00102913001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 247aa MW: 28928.9 Da PI: 7.9302

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00102913001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	74.7	1.1e-23	125	174	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k +s e++s y+++pi++AAkeL+++lT+LK++CR +GI+RWPhRk sl GSBRNA2T00102913001 125 KPLSKETISLYYDMPIAQAAKELNIGLTLLKKKCRDLGIQRWPHRKFMSL 174 67999*****************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.677	105	194	IPR003035	RWP-RK domain
Pfam	PF02042	3.7E-19	127	174	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MNSFSNLECD KVFGKEDKPF SFLEYFSYQS EFTNNFFGLE DEIISSGNYD YYLPSASNFL 60 ALPDLEPISI VSHEDLLNEY GSVSWTEKES MFDEHQREDF DLVKKTETVK KRVREECAYS 120 SYVAKPLSKE TISLYYDMPI AQAAKELNIG LTLLKKKCRD LGIQRWPHRK FMSLDNLIEN 180 VKEKLEKGEG NADEQRKKLE KLKKEKKKMK ESPDLEYEDK TKRLRQACYK ANHKRKRRLV 240 MSTSTT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	196	207	KKLEKLKKEKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00102913001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC011809	2e-50	AC011809.2 Arabidopsis thaliana chromosome I BAC F6A14 genomic sequence, complete sequence.
GenBank	CP002684	2e-50	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013601512.1	1e-167	PREDICTED: protein RKD1
Swissprot	Q9M9U9	2e-95	RKD1_ARATH; Protein RKD1
TrEMBL	A0A3P6CBW2	1e-178	A0A3P6CBW2_BRACM; Uncharacterized protein
TrEMBL	M4DJ64	1e-178	M4DJ64_BRARP; Uncharacterized protein
STRING	Bra016542.1-P	1e-179	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3966	23	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	1e-85	RWP-RK domain-containing protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]