PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00102875001 | ||||||||
Common Name | GSBRNA2T00102875001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | BES1 | ||||||||
Protein Properties | Length: 334aa MW: 36209.1 Da PI: 9.3477 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 201.2 | 3.2e-62 | 17 | 157 | 2 | 145 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasasp 90 +++rkp+w+ErEnn+rRERrRRa+aakiy+GLRaqGny+lpk++DnneVlkALc eAGwvve+DGttyrkg kp+ ++agss++a+p GSBRNA2T00102875001 17 ATRRKPSWRERENNRRRERRRRAVAAKIYTGLRAQGNYNLPKHCDNNEVLKALCSEAGWVVEEDGTTYRKGHKPPsLPGDVAGSSSRATP 106 789************************************************************************8899*********** PP DUF822 91 esslqsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlsl 145 ss++ s ++sp+ sy+ sp+sssfpsps+ ++++ ++++p+l++ + GSBRNA2T00102875001 107 YSSYN----QSPFESPILSYQVSPSSSSFPSPSRGGGDTHNNISTIFPFLRNGGI 157 ***99....889**********************999988888999999998864 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 6.8E-59 | 18 | 139 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MTSDGATSTS AAAAMAATRR KPSWRERENN RRRERRRRAV AAKIYTGLRA QGNYNLPKHC 60 DNNEVLKALC SEAGWVVEED GTTYRKGHKP PSLPGDVAGS SSRATPYSSY NQSPFESPIL 120 SYQVSPSSSS FPSPSRGGGD THNNISTIFP FLRNGGIPSS LPPLRISNSA PVTPPVSSPS 180 SKHPKTLPTW GECFTNQSAK QSMSSFNYPF YAVSAPASPT HHRQFNAPPA TIPECDESDA 240 STVDSGHWIS FQKFSQQQPF LGVSAVPASP TFNLVRPPVP QQLSPNTGAT QEIGQSSEFK 300 FENSQVKPWE GERIHDVAME DLELTLGNAK GRM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 4e-34 | 19 | 103 | 371 | 453 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 4e-34 | 19 | 103 | 371 | 453 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 4e-34 | 19 | 103 | 371 | 453 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 4e-34 | 19 | 103 | 371 | 453 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
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Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 18 | 37 | RRKPSWRERENNRRRERRRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.8429 | 0.0 | flower| leaf| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitously expressed in cotyledons, leaves, hypocotyls and roots. {ECO:0000269|PubMed:12007405}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of brassinosteroid (BR) signaling. Transcription factor that activates target gene expression by binding specifically to the DNA sequence 5'-CANNTG-3'(E box) through its N-terminal domain. Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BIM1, BIM2 or BIM3. The C-terminal domain is probably involved in transcriptional activation (PubMed:12007405, PubMed:15680330, PubMed:18467490, PubMed:19170933). Recruits the transcription elongation factor IWS1 to control BR-regulated gene expression (PubMed:20139304). Forms a trimeric complex with IWS1 and ASHH2/SDG8 to regulate BR-regulated gene expression (PubMed:24838002). Promotes quiescent center (QC) self-renewal by cell divisions in the primary root. Binds to the E-boxes of the BRAVO promoter to repress its expression (PubMed:24981610). {ECO:0000269|PubMed:12007405, ECO:0000269|PubMed:15680330, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19170933, ECO:0000269|PubMed:20139304, ECO:0000269|PubMed:24838002, ECO:0000269|PubMed:24981610}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00102875001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013737959.1 | 0.0 | protein BRASSINAZOLE-RESISTANT 2-like | ||||
Swissprot | Q9LN63 | 1e-172 | BZR2_ARATH; Protein BRASSINAZOLE-RESISTANT 2 | ||||
TrEMBL | A0A3P6BZ86 | 0.0 | A0A3P6BZ86_BRACM; Uncharacterized protein (Fragment) | ||||
STRING | Bra016508.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2472 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19350.6 | 1e-152 | BES1 family protein |