PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00102858001 | ||||||||
Common Name | GSBRNA2T00102858001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 507aa MW: 57181.9 Da PI: 5.7938 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 31.1 | 4e-10 | 343 | 380 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+++e+ LAk++gL+++qV +WF N R + GSBRNA2T00102858001 343 FEHflHPYPKESEKMMLAKQTGLSKNQVANWFINARVR 380 554459******************************88 PP | |||||||
2 | BELL | 112.1 | 3e-36 | 201 | 272 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqel++kk kLl++l+eVdkrY+qy++q+++++ssFe+vag gs kpYts+Al++iS hFr+L+dai+eqi GSBRNA2T00102858001 201 ERQELRSKKDKLLTMLDEVDKRYNQYYHQMEALASSFEVVAGFGSPKPYTSVALNRISCHFRALRDAIKEQI 272 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.8E-44 | 136 | 270 | IPR006563 | POX domain |
Pfam | PF07526 | 3.8E-44 | 141 | 268 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.179 | 321 | 384 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.85E-11 | 324 | 385 | No hit | No description |
SMART | SM00389 | 1.5E-9 | 324 | 388 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.18E-17 | 326 | 391 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-27 | 327 | 390 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.5E-18 | 341 | 380 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 507 aa Download sequence Send to blast |
MAVYYPSNVN CYQQEPIYLN HHHHQQQQQP SSSSAAAAAA SFVGGEENVR NEMVFIPPTG 60 LQNLNGDVPV SSSELTFRDG QGLSLSLLGT QISLPSFHYH QYSSISAKET PPFNKEMLLL 120 GQSDPSSGYA GVYNSYNMSS VLRSRYLKPA QGLLDEVVSV EKEMNQLRKK KKGEDFNNSA 180 KETEGGGGIG GEISIELSTI ERQELRSKKD KLLTMLDEVD KRYNQYYHQM EALASSFEVV 240 AGFGSPKPYT SVALNRISCH FRALRDAIKE QIKMIREKLG EKGGELSLDE QQGGERIPRL 300 RYLDQRLRQQ RALHQQLGMV RPCWRPQRGL PESSVSALRA WLFEHFLHPY PKESEKMMLA 360 KQTGLSKNQV ANWFINARVR LWKPMIEEMY KEEFGDDASE LLTSKSPNST NQEDSSSQQQ 420 QQQENTTNVA FSSEPKPDCT QANEDDPQLH QMNRSGDYDT LMNYQGPNGQ PCLIDTVEFD 480 ILSNMMQAVD EERYDEAGKA RLSASH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 1e-15 | 330 | 388 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 1e-15 | 330 | 388 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.20069 | 2e-58 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00102858001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY570508 | 0.0 | AY570508.1 Arabidopsis thaliana BEL1-like homeodomain 5 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009110262.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 10 | ||||
Refseq | XP_009110263.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 10 | ||||
Swissprot | Q9FXG8 | 0.0 | BLH10_ARATH; BEL1-like homeodomain protein 10 | ||||
TrEMBL | M4DJ20 | 0.0 | M4DJ20_BRARP; Uncharacterized protein | ||||
STRING | Bra016497.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3820 | 19 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19700.3 | 1e-178 | BEL1-like homeodomain 10 |
Publications ? help Back to Top | |||
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