PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00102832001

Common Name

GSBRNA2T00102832001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 765aa MW: 85185 Da PI: 5.8326

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00102832001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.1	1.8e-28	507	557	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k+i+l++l+++F++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ GSBRNA2T00102832001 507 DKTITLDVLRQHFAGSLKDAAKNIGVCPTTLKRICRQHGIQRWPSRKIKKV 557 689**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.938	491	577	IPR003035	RWP-RK domain
Pfam	PF02042	2.5E-25	509	557	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.77E-22	663	758	No hit	No description
PROSITE profile	PS51745	26.62	673	756	IPR000270	PB1 domain
SMART	SM00666	1.3E-25	673	756	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	9.9E-20	674	753	No hit	No description
Pfam	PF00564	1.4E-18	674	755	IPR000270	PB1 domain
CDD	cd06407	2.15E-39	674	754	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 765 aa Download sequence Send to blast
MEDSLVQTEN AIMDTEFMDG LLLDGCWLET TDGSEFLNLT SSDQSSFMWP PTQDTSSICT 60 SEVVSQTYGQ DCASLDEFPW NKRWWIGPGG GGSSITERLL WVPVNRGGKR VLTTREQPYS 120 HDPTCQRLAN YREVSVNYHF SAEKDDSKAL AGLPGRVFLG KLPEWTPDVR FFRSEEYPRV 180 HHAQDCDVRG TLAIPVFEQG SKVCLGVIEV VMTTEMVKLA PELESICRAL QAVDLRSTEV 240 QIPPSLKGCD LSYKAALPEI RNLLRCACET HKLPLAQTWV SCLHQSKSGC RHNDENYIHC 300 VSTIDDACYL GDPTVGEFHE ACSEHHLLKG QGVAGQAFLT NGPCFSPDVS NYKKSDYPLS 360 HHANMFGLHG SVAIRLRCIH TGSVDFVLEF FLPKDCGDVE EQRKMLNALS TIMAHVPRSL 420 RIVTDKELED ESEVIVTPKI EITSEHTKDW LHQSNNPENL GLIFDVGGKA SDEFGLKRGF 480 GYTRDSNINE SSTFSSQMAD TKRTKADKTI TLDVLRQHFA GSLKDAAKNI GVCPTTLKRI 540 CRQHGIQRWP SRKIKKVGHS LQKIQRVIDS VEGVSGLLPI GSFYANFPNL ASSQEPSLQG 600 KTSLPPQPLQ LSKSPVSPYS HSSSSSQCCS SETQLNSDTT TTTDVGGGVL TLSSLENIPQ 660 STNLSLSSLD NDFLRIKVSY GEEKIRFRMG NSRRLSDLLW EIGKRFSIED MSRCDLKYLD 720 EDNEWVLLTC DEDVEECVSV CSTTRSHTIK LLLHVSSHCY NSWQ*

Sequence ? help Back to Top

Protein Sequence Length: 765 aa Download sequence Send to blast

MEDSLVQTEN AIMDTEFMDG LLLDGCWLET TDGSEFLNLT SSDQSSFMWP PTQDTSSICT  60
SEVVSQTYGQ DCASLDEFPW NKRWWIGPGG GGSSITERLL WVPVNRGGKR VLTTREQPYS  120
HDPTCQRLAN YREVSVNYHF SAEKDDSKAL AGLPGRVFLG KLPEWTPDVR FFRSEEYPRV  180
HHAQDCDVRG TLAIPVFEQG SKVCLGVIEV VMTTEMVKLA PELESICRAL QAVDLRSTEV  240
QIPPSLKGCD LSYKAALPEI RNLLRCACET HKLPLAQTWV SCLHQSKSGC RHNDENYIHC  300
VSTIDDACYL GDPTVGEFHE ACSEHHLLKG QGVAGQAFLT NGPCFSPDVS NYKKSDYPLS  360
HHANMFGLHG SVAIRLRCIH TGSVDFVLEF FLPKDCGDVE EQRKMLNALS TIMAHVPRSL  420
RIVTDKELED ESEVIVTPKI EITSEHTKDW LHQSNNPENL GLIFDVGGKA SDEFGLKRGF  480
GYTRDSNINE SSTFSSQMAD TKRTKADKTI TLDVLRQHFA GSLKDAAKNI GVCPTTLKRI  540
CRQHGIQRWP SRKIKKVGHS LQKIQRVIDS VEGVSGLLPI GSFYANFPNL ASSQEPSLQG  600
KTSLPPQPLQ LSKSPVSPYS HSSSSSQCCS SETQLNSDTT TTTDVGGGVL TLSSLENIPQ  660
STNLSLSSLD NDFLRIKVSY GEEKIRFRMG NSRRLSDLLW EIGKRFSIED MSRCDLKYLD  720
EDNEWVLLTC DEDVEECVSV CSTTRSHTIK LLLHVSSHCY NSWQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00102832001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189346	0.0	AC189346.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB042N05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013737919.1	0.0	protein NLP4-like
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	A0A397YP20	0.0	A0A397YP20_BRACM; Uncharacterized protein
STRING	Bra016458.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3461	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]