PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00102693001 | ||||||||
Common Name | GSBRNA2T00102693001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 327aa MW: 36461.4 Da PI: 6.1907 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.4 | 6.9e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +v+ +G g W+t + + g++R++k+c++rw +yl GSBRNA2T00102693001 14 KGAWTQEEDQKLIAYVQHHGEGGWRTLPDKAGLKRCGKSCRLRWANYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 58.1 | 1.9e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +++eE++ ++++++ +G++ W++Iar+++ gRt++++k++w+++ GSBRNA2T00102693001 67 RGEFSQEEEDSIINLHAIHGNK-WSAIARRLP-GRTDNEIKNHWNTH 111 899*******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.783 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.03E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.4E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.50E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.611 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-26 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.02E-13 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MVRTPCCRAE GLKKGAWTQE EDQKLIAYVQ HHGEGGWRTL PDKAGLKRCG KSCRLRWANY 60 LRPDIKRGEF SQEEEDSIIN LHAIHGNKWS AIARRLPGRT DNEIKNHWNT HIKKRLIKKG 120 IDPLTHKSLD QSETLPDKSI GHQEDDDQKS NNKKSLGPSS ARFLNRVANR FGKRLDQSAL 180 SDIIGSGGPF TSHTTPTTSA SECEKSTSSL STPNSSNLHM IHDATSLSSS TFSNDTSAQL 240 VYDNIFDDVE DMTGFSSKNL NDIVSHDDED LLMLDESSSD NTLFMKELAM ILKGDKTETM 300 SFNDSHLAAI NVVDDYSFEG IDNWFG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in trichomes. {ECO:0000269|PubMed:23115560}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in glucosinolates biosynthesis. {ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00102693001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189400 | 0.0 | AC189400.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB056L15, complete sequence. | |||
GenBank | FJ584300 | 0.0 | FJ584300.1 Brassica rapa subsp. pekinensis MYB domain protein 122 pseudogene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013652391.1 | 0.0 | transcription factor MYB122-like | ||||
Swissprot | Q9C9C8 | 1e-151 | MY122_ARATH; Transcription factor MYB122 | ||||
TrEMBL | A0A397YRF0 | 0.0 | A0A397YRF0_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3P6BA85 | 0.0 | A0A3P6BA85_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DHG2 | 0.0 | M4DHG2_BRARP; Uncharacterized protein | ||||
STRING | Bra015939.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74080.1 | 1e-143 | myb domain protein 122 |