PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00102644001 | ||||||||
Common Name | GSBRNA2T00102644001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 719aa MW: 78570.4 Da PI: 6.7471 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.7 | 1.1e-19 | 37 | 92 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q+++Le+ F+++++p+ ++r +L+++lgL rq+k+WFqNrR++ k GSBRNA2T00102644001 37 KKRYHRHTAQQIQRLESSFKECPHPDDKQRNQLSRELGLAPRQIKFWFQNRRTQLK 92 688999**********************************************9877 PP | |||||||
2 | START | 149 | 4.3e-47 | 227 | 448 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....k 78 +a++a++el+++ +ep+W++ e+++ + f++s++ ++ea+r sg+v+m++++lv ++d +W e ++ + GSBRNA2T00102644001 227 IALTAMEELLRLFNTNEPLWTRGDggrEILDLGSYENLFPRSGNrgknhnVRTEASRSSGIVFMNAMTLVDMFMDGV-KWGELFPcivaS 315 68999*****************999988888888888898888899999999*************************.**********9* PP EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS START 79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161 +tl+v+ssg gal+lm+ e+++lsplv+ R+f +Ry++ ++g+w++v vS +q++++ss++ + +pSg+li++++ng+ GSBRNA2T00102644001 316 SKTLAVVSSGmggtheGALHLMYEEMAVLSPLVAtREFCELRYCQMIEQGSWIVVNVSYHLPQFVSQSSNSYK---FPSGCLIQDMPNGY 402 *****************************************************************98777776...************** PP EEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 162 skvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 skvtwvehv+ +++ h+l+r ++++g+a+ga +wv tlqr ce+ GSBRNA2T00102644001 403 SKVTWVEHVETEEKEQtHELYREMIHKGIAFGAERWVTTLQRMCER 448 ***********998766***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-22 | 15 | 96 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.27E-20 | 19 | 94 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.026 | 34 | 94 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-18 | 35 | 98 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.2E-17 | 37 | 92 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.56E-19 | 37 | 95 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 69 | 92 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 45.578 | 217 | 451 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.92E-32 | 218 | 450 | No hit | No description |
CDD | cd08875 | 6.15E-101 | 221 | 447 | No hit | No description |
SMART | SM00234 | 1.3E-41 | 226 | 448 | IPR002913 | START domain |
Pfam | PF01852 | 2.6E-40 | 227 | 448 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.7E-6 | 283 | 446 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.02E-18 | 469 | 705 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009828 | Biological Process | plant-type cell wall loosening | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 719 aa Download sequence Send to blast |
MSFVGGVGGS GSGGGDGGGS GSGSQQHHDG SETDRKKKRY HRHTAQQIQR LESSFKECPH 60 PDDKQRNQLS RELGLAPRQI KFWFQNRRTQ LKAQHERADN NALKAENDKI RCENIAIREA 120 IKHAICPNCG GPPVNEDPYF DEHKLRIENA HLRDELERMS TVASKYMGRP ISSHLSTLHP 180 LHISPLDLSM TGPSLDFDLL PGSSMHSHPN NNLATISEMD KPLMNDIALT AMEELLRLFN 240 TNEPLWTRGD GGREILDLGS YENLFPRSGN RGKNHNVRTE ASRSSGIVFM NAMTLVDMFM 300 DGVKWGELFP CIVASSKTLA VVSSGMGGTH EGALHLMYEE MAVLSPLVAT REFCELRYCQ 360 MIEQGSWIVV NVSYHLPQFV SQSSNSYKFP SGCLIQDMPN GYSKVTWVEH VETEEKEQTH 420 ELYREMIHKG IAFGAERWVT TLQRMCERFA SLLAPATSSR DLGGVIPSPE GKRSMMRLAH 480 RMVSNYCISV SRSNNTHSTV VAELNEVGVR VTAHKSPEPN GTILCAATTF WLPNSPQNVF 540 NFLKDERTRP QWDVLSNRNA VQEVAHIANG SHPGCCISVL RASNASQSQS NNMLILQETS 600 IDSSGALVVY SPVDLPALNI AMSGDDTSYI PLLSSGFAIS PDGNHSSSTT EQGGGASTSS 660 GFGGGGSLIT VGFQIMVSNL PSAKLNMESV ETVNNLIGTT VHQIKTGLNN CPSGSTTA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 9 | 19 | SGSGGGDGGGS |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During embryo development, expressed in all cells at the 4- and 16-cell embryo stages. Expression is restricted to the protoderm from the globular stage onward. {ECO:0000269|PubMed:25564655}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in apical meristems and young epidermal tissue including trichomes and stipules. Expressed in lateral root tips, the L1 layer of apical inflorescence meristems and early flower primordia, carpel and petal epidermis, stigma papillae, ovule primordia, nucellus and embryo. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00232 | DAP | Transfer from AT1G73360 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00102644001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ166821 | 0.0 | DQ166821.1 Brassica napus baby boom interacting protein 1A (BIP1A) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013649619.1 | 0.0 | homeobox-leucine zipper protein HDG11-like | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | Q0H8F7 | 0.0 | Q0H8F7_BRANA; Baby boom interacting protein 1A | ||||
STRING | Bra015996.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3004 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |