PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00102479001 | ||||||||
Common Name | GSBRNA2T00102479001, LOC106354160, LOC106395126 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 140aa MW: 15257.8 Da PI: 5.6303 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.8 | 4.1e-16 | 13 | 62 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykG+r++k +g+Wv+eIr+p + r r +lg+f tae+Aa a++ a +l+ GSBRNA2T00102479001 13 KYKGIRRRK-WGKWVSEIRVPGT---RERLWLGSFSTAEGAAVAHDVAFYCLHR 62 8*****998.**********943...5*********************999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.17E-24 | 12 | 76 | No hit | No description |
PROSITE profile | PS51032 | 20.732 | 13 | 74 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-17 | 13 | 73 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-24 | 13 | 74 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.2E-27 | 13 | 80 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.2E-8 | 13 | 60 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-9 | 14 | 25 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-9 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MDPRDGGETH QAKYKGIRRR KWGKWVSEIR VPGTRERLWL GSFSTAEGAA VAHDVAFYCL 60 HRPSTLDNEA FNFPHLLQPS LASNTSPKSI QKAASDAGMA VDAGFSLNND SASGGVEEGS 120 ERETLNISVY DYLEDDGRI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-11 | 11 | 75 | 12 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00102479001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC016162 | 4e-93 | AC016162.5 Arabidopsis thaliana chromosome 1 BAC F3I17 genomic sequence, complete sequence. | |||
GenBank | AC016163 | 4e-93 | AC016163.6 Arabidopsis thaliana chromosome 1 BAC F26A9 genomic sequence, complete sequence. | |||
GenBank | BT010999 | 4e-93 | BT010999.1 Arabidopsis thaliana At1g71520 gene, complete cds. | |||
GenBank | BT014816 | 4e-93 | BT014816.1 Arabidopsis thaliana At1g71520 gene, complete cds. | |||
GenBank | CP002684 | 4e-93 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013691101.1 | 1e-101 | ethylene-responsive transcription factor ERF020-like | ||||
Refseq | XP_022544890.1 | 1e-101 | ethylene-responsive transcription factor ERF020-like | ||||
Swissprot | Q9C9I8 | 1e-75 | ERF20_ARATH; Ethylene-responsive transcription factor ERF020 | ||||
TrEMBL | A0A3P6BLW3 | 2e-98 | A0A3P6BLW3_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DI06 | 2e-98 | M4DI06_BRARP; Uncharacterized protein | ||||
STRING | Bra016133.1-P | 4e-99 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3865 | 28 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71520.1 | 6e-78 | ERF family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106354160 | 106395126 |
Publications ? help Back to Top | |||
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