PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00102449001
Common NameGSBRNA2T00102449001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 224aa    MW: 25364 Da    PI: 6.1066
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00102449001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.11.3e-0763116154
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +++  n++Er RR r+  ++ +L +llP  s+ ++kK    +i  ++v YI +L
  GSBRNA2T00102449001  63 KKQERNANERLRRMRLHASYLTLGTLLPDHSSSSKKKWCAPSIMDRVVSYIPKL 116
                          67889************************87888889**************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-956128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-762121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.57362116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.64E-463121No hitNo description
PfamPF000102.0E-463116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-468122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MSDHQILESS LLDDLFLIPA ETIVEEFLEK DDTFRAQSES KGKEVVIVLH DEDAHGSSSG  60
AAKKQERNAN ERLRRMRLHA SYLTLGTLLP DHSSSSKKKW CAPSIMDRVV SYIPKLLNEV  120
EELTLRKKKL VEAIESKKSQ RLERQDPHTL AISVLELGRS CDEAVVQISM VKEKEEEFSN  180
LLHVLEMQGS SILSASTSLV CRDQRVVCYN FHVKMDEKPC EVR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00102449001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013649456.11e-160transcription factor bHLH160-like isoform X2
SwissprotF4I8F95e-83BH160_ARATH; Transcription factor bHLH160
TrEMBLA0A397YQW41e-153A0A397YQW4_BRACM; Uncharacterized protein
STRINGBra016156.1-P1e-148(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105582234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71200.12e-85bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Yan J, et al.
    Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 That Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis.
    Plant Cell, 2017. 29(12): p. 3012-3029
    [PMID:29114014]