PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00102426001 | ||||||||
Common Name | GSBRNA2T00102426001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 182aa MW: 20445.3 Da PI: 10.0851 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 49.4 | 7.8e-16 | 59 | 97 | 18 | 56 |
HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++kn+++++++++eLA+ l+L++rqV vWFqNrRa+ k GSBRNA2T00102426001 59 SYKKNHTLTHKQKQELATFLKLSQRQVEVWFQNRRARSK 97 699**********************************98 PP | |||||||
2 | HD-ZIP_I/II | 89.7 | 3.4e-29 | 58 | 131 | 16 | 90 |
HD-ZIP_I/II 16 esFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +s++++++L++++K+ela+ L+l++rqv+vWFqnrRAR k+k++E+++e+Lkr + +lke+n++L+keveeLr + GSBRNA2T00102426001 58 HSYKKNHTLTHKQKQELATFLKLSQRQVEVWFQNRRARSKLKHTEMECEYLKRLFGSLKEQNRQLQKEVEELR-A 131 58999*******************************************************************9.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 2.3E-8 | 46 | 103 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.33E-11 | 58 | 100 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-13 | 58 | 100 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.42E-13 | 59 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.1E-13 | 59 | 97 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 13.281 | 60 | 99 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 74 | 97 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 2.5E-14 | 99 | 142 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.6E-7 | 99 | 133 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MAVSPNSSSL ELTISIPSFS PSPSLPSSGN HMVRDLDINQ TPKTKNDREW IMIGATPHSY 60 KKNHTLTHKQ KQELATFLKL SQRQVEVWFQ NRRARSKLKH TEMECEYLKR LFGSLKEQNR 120 QLQKEVEELR ALKPVSASVL TMCPRCERVT VAADNGSNAV EEGTALRSQS RMTISSSSTL 180 C* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00102426001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009105759.1 | 1e-107 | PREDICTED: homeobox-leucine zipper protein ATHB-X | ||||
Swissprot | Q8GXM7 | 1e-77 | ATHBX_ARATH; Homeobox-leucine zipper protein ATHB-X | ||||
TrEMBL | A0A397YQU7 | 1e-105 | A0A397YQU7_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DI47 | 1e-105 | M4DI47_BRARP; Uncharacterized protein | ||||
STRING | Bra016174.1-P | 1e-106 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13380 | 16 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G70920.1 | 8e-78 | homeobox-leucine zipper protein 18 |
Publications ? help Back to Top | |||
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