PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00102251001 | ||||||||
Common Name | GSBRNA2T00102251001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | Nin-like | ||||||||
Protein Properties | Length: 162aa MW: 18198.3 Da PI: 4.7647 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 23.5 | 1.1e-07 | 114 | 134 | 30 | 52 |
RWP-RK 30 TvLKriCRqyGIkRWPhRkiksl 52 Tv K ++GI+RWPhRk+ksl GSBRNA2T00102251001 114 TVTKE--KELGINRWPHRKLKSL 134 55555..489***********97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 162 aa Download sequence Send to blast |
MDPNSVLPLD SLSIKNQDDP DSCFDMLKKL PPLDSLLYIE DPKPNAGFNS QFDSTSFEEF 60 SENIEGNNTI SSDTMLTEEL FFSSYSSSHV AAQNNDSVSS NERCQKRTLK KSNTVTKEKE 120 LGINRWPHRK LKSLNSLIGN LKGVGMEEEV KNLEEHRILI K* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00102251001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013620055.1 | 1e-77 | PREDICTED: protein RKD4-like | ||||
Swissprot | Q9LVU8 | 7e-45 | RKD4_ARATH; Protein RKD4 | ||||
TrEMBL | A0A3P6CSE1 | 1e-106 | A0A3P6CSE1_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g046220.1 | 5e-74 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12585 | 22 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G53040.1 | 3e-47 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
---|---|---|---|
|