PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00102251001
Common NameGSBRNA2T00102251001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Nin-like
Protein Properties Length: 162aa    MW: 18198.3 Da    PI: 4.7647
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00102251001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK23.51.1e-071141343052
               RWP-RK  30 TvLKriCRqyGIkRWPhRkiksl 52 
                          Tv K    ++GI+RWPhRk+ksl
  GSBRNA2T00102251001 114 TVTKE--KELGINRWPHRKLKSL 134
                          55555..489***********97 PP

Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MDPNSVLPLD SLSIKNQDDP DSCFDMLKKL PPLDSLLYIE DPKPNAGFNS QFDSTSFEEF  60
SENIEGNNTI SSDTMLTEEL FFSSYSSSHV AAQNNDSVSS NERCQKRTLK KSNTVTKEKE  120
LGINRWPHRK LKSLNSLIGN LKGVGMEEEV KNLEEHRILI K*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00102251001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013620055.11e-77PREDICTED: protein RKD4-like
SwissprotQ9LVU87e-45RKD4_ARATH; Protein RKD4
TrEMBLA0A3P6CSE11e-106A0A3P6CSE1_BRAOL; Uncharacterized protein
STRINGBo2g046220.15e-74(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125852230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.13e-47RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER
    Gene regulatory network models for floral organ determination.
    Methods Mol. Biol., 2014. 1110: p. 441-69
    [PMID:24395275]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]