PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00102210001 | ||||||||
Common Name | GSBRNA2T00102210001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 248aa MW: 27999.8 Da PI: 8.923 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.6 | 1e-16 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll +++ ++G g W+ ++ + g++R++k+c++rw++yl GSBRNA2T00102210001 10 KGAWTAEEDNLLRQCIDKYGEGKWHQVPLRAGLNRCRKSCRLRWLNYL 57 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.1 | 5.6e-15 | 63 | 108 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +E +ll++++k+lG++ W++Ia +++ gRt++++k++w+++l GSBRNA2T00102210001 63 RGKLNSDEVDLLIRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 108 6777889***************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.899 | 5 | 61 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 5 | 59 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.91E-28 | 7 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-15 | 9 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.2E-16 | 10 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.21E-11 | 12 | 57 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.7E-22 | 60 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-14 | 62 | 110 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.886 | 62 | 112 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.4E-13 | 63 | 108 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.52E-10 | 69 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 248 aa Download sequence Send to blast |
MEGMSKGLKK GAWTAEEDNL LRQCIDKYGE GKWHQVPLRA GLNRCRKSCR LRWLNYLKPS 60 IKRGKLNSDE VDLLIRLHKL LGNRWSLIAG RLPGRTANDV KNYWNTHLSK KHEPGCKTQM 120 KKRNIPCSYT TPAQKIDVFK PRPRSFTVNN GCSHNNGMPE ADIVPLCLGH NDTNNVSENI 180 ITCNKDDDKS ELVSHLMDGQ NRWWESLLDE SQDPAALFPE TTAIKKGATS AFDVEQLWSL 240 LDGETGT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-21 | 8 | 111 | 5 | 107 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed only in leaves and siliques. {ECO:0000269|PubMed:9839469}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH12/MYC1, EGL3, or GL3. Promotes the synthesis of phenylpropanoid-derived compounds such as anthocyanins. {ECO:0000269|PubMed:11148285, ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00102210001 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By sucrose, nitrogen deficiency, ethylene, UV light and drought. {ECO:0000269|PubMed:17053893, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KM403450 | 0.0 | KM403450.1 Brassica rapa cultivar Zi He anthocyanin R2R3-MYB transcription factor (MYB2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009105202.1 | 0.0 | PREDICTED: transcription factor MYB114 | ||||
Swissprot | Q9ZTC3 | 1e-121 | MYB90_ARATH; Transcription factor MYB90 | ||||
TrEMBL | A0A3P6B886 | 0.0 | A0A3P6B886_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CIX8 | 0.0 | M4CIX8_BRARP; Uncharacterized protein | ||||
STRING | Bra004162.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66390.1 | 1e-124 | myb domain protein 90 |