PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00102179001
Common NameGSBRNA2T00102179001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 315aa    MW: 35216.5 Da    PI: 7.5219
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00102179001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.21.8e-15241265226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ktelC+ +++tG C+yGd+C+FaHg
  GSBRNA2T00102179001 241 KTELCNKWQQTGACPYGDNCQFAHG 265
                          9***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.3E-19234272IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-11237271IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-9239266IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.765239267IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-12241265IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-9273308IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-12273306IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-5277304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.972277305IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEKVASAVTD LACVTALNSP PPPLSPQSDK SVTKQHQEDF AASFASLYNS IFSPESQFPD  60
SLSLSPSPPY SSSSPPFRVD IATEHRLRQA SLILEYDELN ENYEVCLSRL QSLMTELDSL  120
RRENDALRQE NVDLLKLIHI STSSSSSSVS PPHVRNRQQI SDFGSQARRR SDPERNSLPK  180
SISVRSPGYL KMMNQGSHGY GNASRQTSQL GSDSVTQKVC VPTKGERDAL ELEVYRQGMT  240
KTELCNKWQQ TGACPYGDNC QFAHGIDELR PVIRHPRYKT EVCRMIVTGA TCPYGHRCHF  300
RHSLTEQERM LLTH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-21241306570Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00102179001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588830.10.0PREDICTED: zinc finger CCCH domain-containing protein 14 isoform X1
RefseqXP_013588831.10.0PREDICTED: zinc finger CCCH domain-containing protein 14 isoform X1
RefseqXP_013588832.10.0PREDICTED: zinc finger CCCH domain-containing protein 14 isoform X1
RefseqXP_013588833.10.0PREDICTED: zinc finger CCCH domain-containing protein 14 isoform X1
SwissprotQ9C9N31e-132C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A3P6BR870.0A0A3P6BR87_BRACM; Uncharacterized protein
STRINGBra004189.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106232533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-131C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]