PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00102152001
Common NameGSBRNA2T00102152001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 352aa    MW: 39988.6 Da    PI: 6.6389
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00102152001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.74.2e-38842252126
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....ssssasec......eaesssss 81 
                          a+kkdrhski T +g+RdRRvRls+ +a++fFdLqd+LGfdk+skt++WLl+++ +aikel++     + ++           ++++++ 
  GSBRNA2T00102152001  84 AVKKDRHSKIQTGQGLRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRRAIKELVQEkklnN-TD---EdfgnigGEVEEEEG 169
                          89**************************************************************65532.22...122333333333333 PP

                  TCP  82 asnsssg..............kaaksaa.kskksqksaasalnlakesrakarararert 126
                          ++    +              +  + +  k +k++k+    + ++k srakar +a+e t
  GSBRNA2T00102152001 170 DDG---DksflygsspdsweeE-VACEVkKAQKRNKKIDLSNIFSKGSRAKARGKAKELT 225
                          332...1234677778777642.33333244445555555566778**********9955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.1E-3885226IPR005333Transcription factor, TCP
PROSITE profilePS5136933.90886144IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MSSSNNDYIN GNNGVYPLSL YLSPLAGHQD IIRNPYNHQP TPSPGQMVSA VPESLMNYMS  60
FSSNRAVNQQ GFKIHEVSRE IKKAVKKDRH SKIQTGQGLR DRRVRLSIGI ARQFFDLQDM  120
LGFDKASKTL DWLLKKSRRA IKELVQEKKL NNTDEDFGNI GGEVEEEEGD DGDKSFLYGS  180
SPDSWEEEVA CEVKKAQKRN KKIDLSNIFS KGSRAKARGK AKELTYDHPE TISEITQTET  240
MDPLKRSIIS NEGEHMTHSL YKEATQEFDS QECILSKTKV NLPTNMDQIY NQNYGTFMLK  300
DQGSSSNYNN ILPQNLDFYY DQNSFIDQPF CAVTKTSFPR GNVWIQDSYL A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-1391144154Putative transcription factor PCF6
5zkt_B4e-1391144154Putative transcription factor PCF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192198VKKAQKR
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed transiently in early stages of floral meristems development but continuously in axillary shoot meristems, specifically in the dorsal part (adaxial). {ECO:0000269|PubMed:11470410}.
UniprotTISSUE SPECIFICITY: Axillary shoot and floral meristems. {ECO:0000269|PubMed:11470410}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in petal morphogenesis. {ECO:0000269|PubMed:17940055}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00102152001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013652262.10.0transcription factor TCP1-like
SwissprotQ9FYG71e-161TCP1_ARATH; Transcription factor TCP1
TrEMBLA0A397YQ720.0A0A397YQ72_BRACM; Uncharacterized protein
STRINGBra004212.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.11e-147TCP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]