PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00101933001
Common NameGSBRNA2T00101933001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 366aa    MW: 42082 Da    PI: 6.7179
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00101933001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.41.2e-202969545
                         SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                         +   rq t++kR+ngi+KKA+ELS+LCd++v +++fs+ gk
  GSBRNA2T00101933001 29 SINARQATYCKRKNGIMKKAKELSILCDIDVVLLMFSPAGK 69
                         55679*********************************997 PP

2K-box15.38.2e-071611954781
                K-box  47 slkeLqqLeqqLekslkkiRskKnellleqieelq 81 
                          s+ +LqqLe+ + +sl +iR +K+++l  q ++l 
  GSBRNA2T00101933001 161 SIDDLQQLENSIRQSLYQIRVHKENVLQHQQQQLM 195
                          689************************99988775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.9E-271776IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.5111769IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-2318109IPR002100Transcription factor, MADS-box
CDDcd002667.76E-2318100No hitNo description
PRINTSPR004044.0E-151939IPR002100Transcription factor, MADS-box
PfamPF003199.8E-193170IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-153954IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-155475IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MRRSIPHIRL KESLFLMGRV KLKIKKLDSI NARQATYCKR KNGIMKKAKE LSILCDIDVV  60
LLMFSPAGKP SLCTGEHSIG EVIAKFSQLA PQERAKRKLD NLEALKKTFM KLDHDVNISE  120
FLERSKPTVE VVSEQVRFLQ KHLSEIHTRL SYWTEVEKVD SIDDLQQLEN SIRQSLYQIR  180
VHKENVLQHQ QQQLMSIECK NELQSDIDLD FGIDIEQQLE NFSWVRTDEN MKAPLKEEED  240
PNLQFYHTYK ELTCSASSSL ESYSGLFGIK TPKLETGSIP GTSVDPNLQY SNLSFLNDPK  300
LQQLAEWNLL GSPADYYVSQ ILEASYRPQF GGNWPSSEMS NYPFTVFDDP LLSRVKQRFC  360
SSSQF*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00101933001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893530.0AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013652330.10.0agamous-like MADS-box protein AGL30 isoform X1
RefseqXP_013652331.10.0agamous-like MADS-box protein AGL30 isoform X1
RefseqXP_013652332.10.0agamous-like MADS-box protein AGL30 isoform X2
SwissprotQ1PFA47e-87AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLM4CJK90.0M4CJK9_BRARP; Uncharacterized protein
STRINGBra004393.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149561620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69540.11e-173AGAMOUS-like 94
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]