PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00101933001 | ||||||||
Common Name | GSBRNA2T00101933001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 366aa MW: 42082 Da PI: 6.7179 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.4 | 1.2e-20 | 29 | 69 | 5 | 45 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + rq t++kR+ngi+KKA+ELS+LCd++v +++fs+ gk GSBRNA2T00101933001 29 SINARQATYCKRKNGIMKKAKELSILCDIDVVLLMFSPAGK 69 55679*********************************997 PP | |||||||
2 | K-box | 15.3 | 8.2e-07 | 161 | 195 | 47 | 81 |
K-box 47 slkeLqqLeqqLekslkkiRskKnellleqieelq 81 s+ +LqqLe+ + +sl +iR +K+++l q ++l GSBRNA2T00101933001 161 SIDDLQQLENSIRQSLYQIRVHKENVLQHQQQQLM 195 689************************99988775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.9E-27 | 17 | 76 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.511 | 17 | 69 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.14E-23 | 18 | 109 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 7.76E-23 | 18 | 100 | No hit | No description |
PRINTS | PR00404 | 4.0E-15 | 19 | 39 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.8E-19 | 31 | 70 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-15 | 39 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-15 | 54 | 75 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MRRSIPHIRL KESLFLMGRV KLKIKKLDSI NARQATYCKR KNGIMKKAKE LSILCDIDVV 60 LLMFSPAGKP SLCTGEHSIG EVIAKFSQLA PQERAKRKLD NLEALKKTFM KLDHDVNISE 120 FLERSKPTVE VVSEQVRFLQ KHLSEIHTRL SYWTEVEKVD SIDDLQQLEN SIRQSLYQIR 180 VHKENVLQHQ QQQLMSIECK NELQSDIDLD FGIDIEQQLE NFSWVRTDEN MKAPLKEEED 240 PNLQFYHTYK ELTCSASSSL ESYSGLFGIK TPKLETGSIP GTSVDPNLQY SNLSFLNDPK 300 LQQLAEWNLL GSPADYYVSQ ILEASYRPQF GGNWPSSEMS NYPFTVFDDP LLSRVKQRFC 360 SSSQF* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00101933001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189353 | 0.0 | AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013652330.1 | 0.0 | agamous-like MADS-box protein AGL30 isoform X1 | ||||
Refseq | XP_013652331.1 | 0.0 | agamous-like MADS-box protein AGL30 isoform X1 | ||||
Refseq | XP_013652332.1 | 0.0 | agamous-like MADS-box protein AGL30 isoform X2 | ||||
Swissprot | Q1PFA4 | 7e-87 | AGL30_ARATH; Agamous-like MADS-box protein AGL30 | ||||
TrEMBL | M4CJK9 | 0.0 | M4CJK9_BRARP; Uncharacterized protein | ||||
STRING | Bra004393.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14956 | 16 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69540.1 | 1e-173 | AGAMOUS-like 94 |
Publications ? help Back to Top | |||
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