PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00101928001 | ||||||||
Common Name | GSBRNA2T00101928001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Dof | ||||||||
Protein Properties | Length: 369aa MW: 40849.4 Da PI: 8.8498 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.2 | 7.4e-38 | 125 | 183 | 2 | 60 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++k l+cprC+s++tkfCyynny++sqPr+fC++C+ryWt+GG++rnvPvG+grrknk GSBRNA2T00101928001 125 PDKLLPCPRCESAHTKFCYYNNYNVSQPRHFCRNCQRYWTAGGSMRNVPVGSGRRKNKG 183 78999****************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 2.0E-31 | 127 | 182 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.5 | 129 | 183 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 6.0E-24 | 131 | 182 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 131 | 167 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MSKSKDTEIK LFGTTITSLL AVDHHDPSSL SSIHGVSYQS KEPSSSSSSS CCPSTGPNMV 60 LANNHEHGNS RFKGPCILSD LNEPPRAAFE ISSPTSSKTN GDQQSEITTT TTSTSEDKPT 120 TLKKPDKLLP CPRCESAHTK FCYYNNYNVS QPRHFCRNCQ RYWTAGGSMR NVPVGSGRRK 180 NKGWPCSNHY LKVTSEDYEN NNNSGTILSF GSSESSVIET GKHQENKTHQ GFLASQVMLP 240 NNTSPWPYQW SPTGRNTSFY PIPFYWGCTV PMWPTSEASP CLGKRSRDET EVETKNTTLR 300 TSEATKNVVW PKLPTKPEKK MEGGLSLFNG FETKGSNRRS LVPETSINLQ ANPAAMSRSM 360 NFRESMQQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.13728 | 0.0 | leaf| seed |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00101928001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269|PubMed:19619493}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189353 | 0.0 | AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013698917.1 | 0.0 | cyclic dof factor 5-like | ||||
Swissprot | Q9SEZ3 | 1e-174 | CDF5_ARATH; Cyclic dof factor 5 | ||||
TrEMBL | A0A0D3CZB0 | 0.0 | A0A0D3CZB0_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g109100.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13090 | 17 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69570.1 | 1e-166 | Dof family protein |
Publications ? help Back to Top | |||
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