PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00101917001
Common NameGSBRNA2T00101917001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 410aa    MW: 46365.8 Da    PI: 7.8487
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00101917001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.81.8e-5251321128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          l pGfrFhPtdeelv++yL++kve+++l++ + i+++diyk++PwdLpk + ++ekewyf+++rd+ky++++r+nr+t++g+Wkatg+d+
  GSBRNA2T00101917001   5 LLPGFRFHPTDEELVSFYLRRKVEHRPLSI-KLITQLDIYKYDPWDLPKFAMTGEKEWYFYCPRDRKYKNSTRPNRVTSAGFWKATGTDR 93 
                          579***************************.89***************7777889*********************************** PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++s+ +++ +gl+k+Lvfykgra kg+ktdW+mhe+rl
  GSBRNA2T00101917001  94 PIYSSdGSKCIGLRKSLVFYKGRAAKGVKTDWMMHEFRL 132
                          ****966677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.16E-574174IPR003441NAC domain
PROSITE profilePS5100557.0285174IPR003441NAC domain
PfamPF023652.4E-257132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MEDVLLPGFR FHPTDEELVS FYLRRKVEHR PLSIKLITQL DIYKYDPWDL PKFAMTGEKE  60
WYFYCPRDRK YKNSTRPNRV TSAGFWKATG TDRPIYSSDG SKCIGLRKSL VFYKGRAAKG  120
VKTDWMMHEF RLPSSSTHSD THLSPNVSNI FINVVHVKKL SSYDSWAICR IFRKTSTTAP  180
KAIPHSFVSS LPTEASTDTE PYEKSSNTSH ISPENSASFN FYRKNMNVTK PRSSYYDEKE  240
VTKTSTCTST SPFSYMDFTS SASPGPCADQ QYLRSLLLAS QETQPSQLPK FINNNDISSF  300
LLNTSSSNSS FLGGYTNQIG SNIDLTTAIL AQEKCPALVN LSQEYQDIGF EENIGGANQD  360
DHHKVKFGDV SSTMVGDQHQ NQRHHMLMES YYSSFSTTND DLPTCFSIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-53517820172NAC domain-containing protein 19
3swm_B4e-53517820172NAC domain-containing protein 19
3swm_C4e-53517820172NAC domain-containing protein 19
3swm_D4e-53517820172NAC domain-containing protein 19
3swp_A4e-53517820172NAC domain-containing protein 19
3swp_B4e-53517820172NAC domain-containing protein 19
3swp_C4e-53517820172NAC domain-containing protein 19
3swp_D4e-53517820172NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}.
UniprotTISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}.
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00101917001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893530.0AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013665409.10.0protein FEZ-like, partial
SwissprotQ9ZVH01e-155FEZ_ARATH; Protein FEZ
TrEMBLA0A3P6BHA30.0A0A3P6BHA3_BRACM; Uncharacterized protein
STRINGBra004403.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-148NAC family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]