PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00101541001 | ||||||||
Common Name | GSBRNA2T00101541001, LOC106429609 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TCP | ||||||||
Protein Properties | Length: 294aa MW: 30929.3 Da PI: 10.3157 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 119 | 5.8e-37 | 43 | 136 | 3 | 97 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaa 91 k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl++a+pai+++tgt++ +a ++ + + + ++++a GSBRNA2T00101541001 43 LKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAATGTGTVPAIAMsV--NGTLKIPTTTNADAD 130 6999***********************************************************8888844421..111111111222222 PP TCP 92 ksaaks 97 ++++ GSBRNA2T00101541001 131 VAENPA 136 222211 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.4E-30 | 47 | 124 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.327 | 48 | 102 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MATIKKHEVA NTVSLEPKAE PSLEVPSISM SLAPPSSSIG PQLKRASTKD RHTKVEGRGR 60 RIRMPATCAA RIFQLTRELG HKSDGETIRW LLENAEPAII AATGTGTVPA IAMSVNGTLK 120 IPTTTNADAD VAENPAKKRR KGPSNSEYID INEPVSVSSG LAPASTAAQQ TLPPGMIPMW 180 AFPSNAVVPT VGAFFLVQNV AGPSNQPQIL AYPAAAAALP STYVAALQQA SSMARPPPPP 240 QVVPNFTGSV MAPSSSSGIA TKNMLRDFSV ESYNKKELHQ FMTTTTAPRS SNH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 141 | AKKRRKG |
2 | 136 | 140 | KKRRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.28123 | 1e-130 | microspore-derived embryo |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00101541001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189580 | 0.0 | AC189580.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011O17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013725814.1 | 0.0 | transcription factor TCP9 | ||||
Swissprot | O64647 | 1e-130 | TCP9_ARATH; Transcription factor TCP9 | ||||
TrEMBL | A0A0D3B6W6 | 0.0 | A0A0D3B6W6_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6AFH8 | 0.0 | A0A3P6AFH8_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g038900.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9831 | 24 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 1e-118 | TCP family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106429609 |
Publications ? help Back to Top | |||
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