PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00101541001

Common Name

GSBRNA2T00101541001, LOC106429609

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 294aa MW: 30929.3 Da PI: 10.3157

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00101541001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	119	5.8e-37	43	136	3	97
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaa 91 k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl++a+pai+++tgt++ +a ++ + + + ++++a GSBRNA2T00101541001 43 LKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAATGTGTVPAIAMsV--NGTLKIPTTTNADAD 130 6999***********************************************************8888844421..111111111222222 PP TCP 92 ksaaks 97 ++++ GSBRNA2T00101541001 131 VAENPA 136 222211 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.4E-30	47	124	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.327	48	102	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MATIKKHEVA NTVSLEPKAE PSLEVPSISM SLAPPSSSIG PQLKRASTKD RHTKVEGRGR 60 RIRMPATCAA RIFQLTRELG HKSDGETIRW LLENAEPAII AATGTGTVPA IAMSVNGTLK 120 IPTTTNADAD VAENPAKKRR KGPSNSEYID INEPVSVSSG LAPASTAAQQ TLPPGMIPMW 180 AFPSNAVVPT VGAFFLVQNV AGPSNQPQIL AYPAAAAALP STYVAALQQA SSMARPPPPP 240 QVVPNFTGSV MAPSSSSGIA TKNMLRDFSV ESYNKKELHQ FMTTTTAPRS SNH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	141	AKKRRKG
2	136	140	KKRRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.28123	1e-130	microspore-derived embryo

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269\|PubMed:25527103}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00101541001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189580	0.0	AC189580.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011O17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013725814.1	0.0	transcription factor TCP9
Swissprot	O64647	1e-130	TCP9_ARATH; Transcription factor TCP9
TrEMBL	A0A0D3B6W6	0.0	A0A0D3B6W6_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6AFH8	0.0	A0A3P6AFH8_BRAOL; Uncharacterized protein
STRING	Bo3g038900.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9831	24	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	1e-118	TCP family protein

Link Out ? help Back to Top
Entrez Gene	106429609

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]