PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00101499001
Common NameGSBRNA2T00101499001, LOC106385507
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 277aa    MW: 30091.1 Da    PI: 5.4427
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00101499001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.1e-1779128255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a ++++g
  GSBRNA2T00101499001  79 NYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVASLAIKG 128
                          69****998.**********843...6********************9988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-1278128IPR001471AP2/ERF domain
CDDcd000182.34E-3378138No hitNo description
SMARTSM003809.2E-3879142IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-2179136IPR016177DNA-binding domain
PROSITE profilePS5103222.87979136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-3179137IPR001471AP2/ERF domain
PRINTSPR003672.3E-108091IPR001471AP2/ERF domain
PRINTSPR003672.3E-10102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGTIEKSVSQ VTLTSSAIFT VSSSSSAAAS FSSSTTSSSS SSTTYNSKRK ASPRSSEDQE  60
DDDNVVKRRK ISGGDKHPNY RGVRMRSWGK WVSEIREPRK KSRIWLGTYP TAEMAARAHD  120
VASLAIKGTT AHLNFPELSG ELPRPVTRSP KDIQAAATAA AVNWQDSGAN SLRMNNSDVA  180
ELAETEPSRG VMAQSLSGSV VFSSDINTRD LSETSCASTT SFADKDKEEE KLFDLPDLVT  240
DEIIRNDAFS FYSSTWQLCG ADHGFRLEEP FFCLND*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1774137973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14769KRKASPRSSEDQEDDDNVVKRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00101499001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893990.0AC189399.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB056I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626007.10.0PREDICTED: ethylene-responsive transcription factor ERF034-like isoform X1
RefseqXP_013680873.10.0ethylene-responsive transcription factor ERF034 isoform X1
SwissprotQ8LBQ71e-112ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0D3B6S30.0A0A0D3B6S3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6A9J90.0A0A3P6A9J9_BRAOL; Uncharacterized protein
STRINGBo3g037480.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-107ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]