PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00101355001 | ||||||||
Common Name | GSBRNA2T00101355001, LOC106434403 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HB-other | ||||||||
Protein Properties | Length: 343aa MW: 37517.3 Da PI: 8.5854 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 16.6 | 1.3e-05 | 16 | 74 | 9 | 55 |
HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55 +++e+e++ ++ + p +++ e LA+k ++ +q+ +WFqNrR+ GSBRNA2T00101355001 16 LAEVTEMEAVLKQhnTAMPGRDTLEALADKFsdtverkgktVVQFKQIWNWFQNRRYAL 74 556677777777544778999999999999999999999888999***********965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.5E-9 | 4 | 78 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.584 | 5 | 77 | IPR001356 | Homeobox domain |
SMART | SM00389 | 0.0026 | 7 | 81 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.95E-4 | 13 | 75 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-7 | 13 | 80 | IPR009057 | Homeodomain-like |
Pfam | PF16719 | 2.4E-41 | 140 | 267 | IPR032001 | SAWADEE domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MGRPPSNGSP AFRFNLAEVT EMEAVLKQHN TAMPGRDTLE ALADKFSDTV ERKGKTVVQF 60 KQIWNWFQNR RYALRASRNK APGKLSVSSM PRGLDPTNPT RSVLPPSTGP KPTHMIGNLS 120 GMTPAPPAPG VMRSGSDNSY LEFEAKSARD GAWYDVQAFL AHRNLEIGDP EVQVRFAGFE 180 VEEDEWINVK RHVRQRSLPC EASECVAVLA GDLVLCFQEG KDQALYFDAI VLDAQRRRHD 240 VRGCRCRFLV RYSHDQSEEI VPLRKICRRP ETDYRLQQLH SAANDFANSK PAPDAAAKAP 300 LPPSTASAPI VPPDVKDPSL SAASATSAQP SSNAATVPTG SA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4iuq_A | 9e-47 | 141 | 271 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_B | 9e-47 | 141 | 271 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iur_A | 9e-47 | 141 | 271 | 4 | 134 | SHH1 SAWADEE |
4iur_B | 9e-47 | 141 | 271 | 4 | 134 | SHH1 SAWADEE |
4iut_A | 9e-47 | 141 | 271 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iut_B | 9e-47 | 141 | 271 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_A | 9e-47 | 141 | 271 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_B | 9e-47 | 141 | 271 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_A | 9e-47 | 141 | 271 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_B | 9e-47 | 141 | 271 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.10827 | 0.0 | microspore-derived embryo| root| seed |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00101355001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY093042 | 0.0 | AY093042.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds. | |||
GenBank | BT003428 | 0.0 | BT003428.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013616258.1 | 0.0 | PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2 | ||||
Refseq | XP_013730727.1 | 0.0 | protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X3 | ||||
Swissprot | Q8RWJ7 | 0.0 | SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
TrEMBL | M4F924 | 0.0 | M4F924_BRARP; Uncharacterized protein | ||||
STRING | Bra037587.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7399 | 24 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.3 | 0.0 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
Link Out ? help Back to Top | |
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Entrez Gene | 106434403 |
Publications ? help Back to Top | |||
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