PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00101355001
Common NameGSBRNA2T00101355001, LOC106434403
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HB-other
Protein Properties Length: 343aa    MW: 37517.3 Da    PI: 8.5854
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00101355001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox16.61.3e-051674955
                         HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
             Homeobox  9 keqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                           +++e+e++ ++  +  p +++ e LA+k            ++ +q+ +WFqNrR+  
  GSBRNA2T00101355001 16 LAEVTEMEAVLKQhnTAMPGRDTLEALADKFsdtverkgktVVQFKQIWNWFQNRRYAL 74
                         556677777777544778999999999999999999999888999***********965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-9478IPR009057Homeodomain-like
PROSITE profilePS500718.584577IPR001356Homeobox domain
SMARTSM003890.0026781IPR001356Homeobox domain
CDDcd000866.95E-41375No hitNo description
Gene3DG3DSA:1.10.10.602.7E-71380IPR009057Homeodomain-like
PfamPF167192.4E-41140267IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGRPPSNGSP AFRFNLAEVT EMEAVLKQHN TAMPGRDTLE ALADKFSDTV ERKGKTVVQF  60
KQIWNWFQNR RYALRASRNK APGKLSVSSM PRGLDPTNPT RSVLPPSTGP KPTHMIGNLS  120
GMTPAPPAPG VMRSGSDNSY LEFEAKSARD GAWYDVQAFL AHRNLEIGDP EVQVRFAGFE  180
VEEDEWINVK RHVRQRSLPC EASECVAVLA GDLVLCFQEG KDQALYFDAI VLDAQRRRHD  240
VRGCRCRFLV RYSHDQSEEI VPLRKICRRP ETDYRLQQLH SAANDFANSK PAPDAAAKAP  300
LPPSTASAPI VPPDVKDPSL SAASATSAQP SSNAATVPTG SA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A9e-471412714134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B9e-471412714134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A9e-471412714134SHH1 SAWADEE
4iur_B9e-471412714134SHH1 SAWADEE
4iut_A9e-471412714134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B9e-471412714134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A9e-471412714134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B9e-471412714134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A9e-471412714134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B9e-471412714134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.108270.0microspore-derived embryo| root| seed
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00101355001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0930420.0AY093042.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds.
GenBankBT0034280.0BT003428.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616258.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2
RefseqXP_013730727.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X3
SwissprotQ8RWJ70.0SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLM4F9240.0M4F924_BRARP; Uncharacterized protein
STRINGBra037587.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73992437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.30.0sequence-specific DNA binding transcription factors;sequence-specific DNA binding
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]