PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00101201001
Common NameGSBRNA2T00101201001, LOC106435647
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HB-PHD
Protein Properties Length: 689aa    MW: 76908.3 Da    PI: 4.4503
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00101201001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox41.12.9e-13585631753
                          --HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
             Homeobox   7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                          +t++ +++L + F++nryp+ ++r+ LAk+l++t +qV+ WF N R 
  GSBRNA2T00101201001 585 HTNSRTQRLFQSFQENRYPDINTRKNLAKELQMTVKQVSSWFNNTRF 631
                          689999**************************************996 PP
2PHD39.51.3e-13229284151
                          SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                  PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                          +C+ Cg+   + +++++lCdg C++ fH++C+ ++l++e++p +  +wlC+ C++k
  GSBRNA2T00101201001 229 FCAKCGSkdVHVDNDIILCDGfCDRGFHQYCVAPPLRKEDIPPDdeSWLCPGCDCK 284
                          699***965556********88*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.19E-13220284IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.105.6E-13225283IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.083227284IPR019787Zinc finger, PHD-finger
PfamPF006284.4E-11229284IPR019787Zinc finger, PHD-finger
SMARTSM002495.0E-9229282IPR001965Zinc finger, PHD-type
CDDcd155045.84E-27229281No hitNo description
PROSITE patternPS013590230281IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5007112.843576636IPR001356Homeobox domain
SMARTSM003896.8E-9578640IPR001356Homeobox domain
SuperFamilySSF466891.24E-12583636IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-12585637IPR009057Homeodomain-like
PfamPF000468.6E-11585631IPR001356Homeobox domain
CDDcd000862.60E-10586630No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MDRRRTRSSG SGLDQTNPEV PVQSNASAPL QTPEGKGISS GASREEHKST PVTGKKSSGS  60
HRELVLGLPC RGQFEFHRSS KKPGVGGERN VVASSHKRAK RSKEAPGSSS VDVNATPVDG  120
SKQRKTYTKK VEVREDDEYT RIKKKLRYFL NRIRYEQSLI DAYSLEGWKG SSAEKLRPEK  180
ELERARKEIL RRKVKIRELF QHVDTLCAEG SIPESLFDSG GEISSEDIFC AKCGSKDVHV  240
DNDIILCDGF CDRGFHQYCV APPLRKEDIP PDDESWLCPG CDCKDYSFDL LNDSLGTKLS  300
VSYSWEKVFP EAAEAMAGGD QTLDCDLPSD DSEDEEYDPD GLNDNADDED GSDDSDESEN  360
EDGSGGESDC TSASDEMIES LKEAKDIMDL PSDDSEDDDY DPDAPIRDED KMQESSNSDN  420
TSDSGDLETF LKRDESNQQD EGKPGRKKSQ LPDVPISESD TGIDDDDDDD DDDDDGLVDV  480
PGRRKVERLD YKKLYDDEYE NVPTSSSDDE DWDKTARKED FESGEEGDTV PLKQHSEAED  540
HTSTKKPRQT PKRESSKKDT LKAPQEVPRE NGFSGEKSSS AVFKHTNSRT QRLFQSFQEN  600
RYPDINTRKN LAKELQMTVK QVSSWFNNTR FSTNKRIASK EDVEKLRTGE GETSVAGSSE  660
QTMETKSVVE NKIGASDLTN TGSRKRRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140146RIKKKLR
2481488GRRKVERL
3683687RKRRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Primarily detected in root tissue.
Functional Description ? help Back to Top
Source Description
UniProtBinds only to large DNA fragments. Recognizes a DNA fragment carrying 8 copies of box7 motif of the light-induced cab-E promoter of Nicotiana plumbaginifolia. Also recognizes the box7m1 motif.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00101201001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013732009.10.0homeobox protein HAT3.1
SwissprotQ049960.0HAT31_ARATH; Homeobox protein HAT3.1
TrEMBLA0A0D3ACA90.0A0A0D3ACA9_BRAOL; Uncharacterized protein
STRINGBo1g114630.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72702543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.10.0Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]