PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00100642001 | ||||||||
Common Name | GSBRNA2T00100642001, NF-YC10B | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NF-YC | ||||||||
Protein Properties | Length: 183aa MW: 20606.2 Da PI: 9.6271 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 42.2 | 1.7e-13 | 74 | 160 | 14 | 99 |
NF-YC 14 tdfknhelPlarikkilkadedv.kmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 +d k ++P+ ri++i+++d+ ++i +a l+ ka elfi ++ ++ + + k++ ++ ++++v++ + ++fl d vp++ GSBRNA2T00100642001 74 EDAKMIRFPMNRIRRIMRSDNSApQIIMQDAVFLVNKATELFIERFSEEAYGSSVKDKKKFIHYKHLSSVVSNEERYEFLADCVPEK 160 6788999*************9873567889999***************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.52E-17 | 79 | 161 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.5E-19 | 80 | 144 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 4.5E-22 | 81 | 159 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MVSSKKRKSD GVNKGDGLNA RSSGSKSKKN SSNKANLKDA AKKDAEVHEI SESSSSEGRR 60 DEPKESNGGV VVSEDAKMIR FPMNRIRRIM RSDNSAPQII MQDAVFLVNK ATELFIERFS 120 EEAYGSSVKD KKKFIHYKHL SSVVSNEERY EFLADCVPEK LKAEVALEEW ERSMTDRWKE 180 PT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.10946 | 0.0 | microspore-derived embryo| seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00100642001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC797147 | 0.0 | KC797147.1 Brassica napus transcription factor subunit NF-YC10B (NF-YC10B) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013709897.1 | 1e-130 | chromatin accessibility complex protein 1 isoform X4 | ||||
Refseq | XP_013709898.1 | 1e-130 | chromatin accessibility complex protein 1 isoform X5 | ||||
TrEMBL | A0A078E130 | 1e-129 | A0A078E130_BRANA; Transcription factor subunit NF-YC10B | ||||
STRING | Bo5g008650.1 | 2e-97 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11190 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 3e-63 | nuclear factor Y, subunit C10 |
Publications ? help Back to Top | |||
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