PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00100534001 | ||||||||
Common Name | GSBRNA2T00100534001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 328aa MW: 36931.7 Da PI: 7.5617 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 177.9 | 9.7e-56 | 156 | 259 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 ql++fwe+q iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaavtrtd GSBRNA2T00100534001 156 QLQVFWENQfkeIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTD 245 89******99999***************************************************************************** PP NF-YC 88 ifdflvdivprdel 101 ifdflvdivpr++l GSBRNA2T00100534001 246 IFDFLVDIVPREDL 259 ***********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 4.19E-32 | 145 | 250 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.3E-37 | 170 | 242 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.1E-21 | 178 | 241 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 328 aa Download sequence Send to blast |
MADQTRTAKH VESKNETSSD RSTRILTKAQ RLTRHPPFNA FHTYYTRFCC CCLLFPSLLK 60 SKKEYQILKL KEYPTSVFPT IQLFLFSDSP YKSYSSGIMD QQEHGQSGAM NYGTNPYQTN 120 PMTTTAAGSV GPAAPQGQLA FHQIHQQQQQ QQLTQQLQVF WENQFKEIEK TTDFKNHSLP 180 LARIKKIMKA DEDVRMISAE APVVFARACE MFILELTLRS WNHTEENKRR TLQKNDIAAA 240 VTRTDIFDFL VDIVPREDLR DEVLGRGTAP EAAAAGYPYG YLPPGTGPIG NPGMVMGNPG 300 GAYPPNPYMG QPMWQQQQGP DQTDPEN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-62 | 164 | 256 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 228 | 234 | RRTLQKN |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bna.5308 | 1e-148 | microspore-derived embryo| seed |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11867211, ECO:0000269|PubMed:17322342}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00100534001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KC797145 | 0.0 | KC797145.1 Brassica napus transcription factor subunit NF-YC9B (NF-YC9B) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013586294.1 | 1e-172 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_013711368.1 | 1e-172 | nuclear transcription factor Y subunit C-9 | ||||
Swissprot | Q8L4B2 | 1e-133 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | A0A3P6EPQ8 | 0.0 | A0A3P6EPQ8_BRAOL; Uncharacterized protein (Fragment) | ||||
STRING | Bo5g009380.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM478 | 28 | 160 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G08970.4 | 4e-88 | nuclear factor Y, subunit C9 |