PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00100395001 | ||||||||
Common Name | GSBRNA2T00100395001, LOC106350560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NF-X1 | ||||||||
Protein Properties | Length: 1120aa MW: 122001 Da PI: 8.0647 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 23.8 | 9.9e-08 | 322 | 340 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C+k+CH GpC+pC+ GSBRNA2T00100395001 322 CGRHQCEKTCHVGPCDPCQ 340 ******************6 PP | |||||||
2 | zf-NF-X1 | 18.1 | 6e-06 | 386 | 403 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H C++ CH+GpC+ C GSBRNA2T00100395001 386 CGNHFCSEVCHPGPCGDC 403 ****************99 PP | |||||||
3 | zf-NF-X1 | 26.8 | 1.1e-08 | 445 | 462 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG H+C++lCH G+CppC GSBRNA2T00100395001 445 CGLHTCNELCHSGDCPPC 462 ****************** PP | |||||||
4 | zf-NF-X1 | 18.6 | 4.1e-06 | 543 | 561 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C++lCH G CppC GSBRNA2T00100395001 543 CGQHSCESLCHSGHCPPCL 561 ******************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57850 | 9.0E-6 | 141 | 213 | No hit | No description |
PROSITE profile | PS50016 | 8.858 | 150 | 211 | IPR019787 | Zinc finger, PHD-finger |
PROSITE profile | PS50089 | 9.509 | 153 | 209 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS01359 | 0 | 153 | 208 | IPR019786 | Zinc finger, PHD-type, conserved site |
CDD | cd06008 | 7.12E-6 | 242 | 305 | No hit | No description |
SMART | SM00438 | 0.21 | 267 | 285 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 8.1 | 269 | 284 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.15E-12 | 312 | 360 | No hit | No description |
SMART | SM00438 | 6.4E-5 | 322 | 341 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 9.3E-6 | 322 | 339 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 3.70E-9 | 376 | 421 | No hit | No description |
SMART | SM00438 | 2.6E-5 | 386 | 405 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 7.2E-5 | 386 | 403 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 5.16E-14 | 435 | 482 | No hit | No description |
SMART | SM00438 | 2.3E-6 | 445 | 464 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 4.5E-7 | 445 | 462 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 77 | 504 | 535 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 18 | 504 | 515 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 5.83E-10 | 533 | 585 | No hit | No description |
SMART | SM00438 | 2.0E-4 | 543 | 562 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 1.0E-4 | 543 | 560 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.26E-6 | 590 | 637 | No hit | No description |
SMART | SM00438 | 0.079 | 600 | 618 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 22 | 600 | 617 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.015 | 653 | 683 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.017 | 653 | 668 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 8.30E-5 | 681 | 730 | No hit | No description |
SMART | SM00438 | 0.017 | 692 | 713 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.46 | 693 | 711 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01424 | 1.9E-4 | 825 | 889 | IPR001374 | R3H domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009642 | Biological Process | response to light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009697 | Biological Process | salicylic acid biosynthetic process | ||||
GO:0010188 | Biological Process | response to microbial phytotoxin | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1120 aa Download sequence Send to blast |
MSSQVRRDRR HQSSQQTWVP RGASTPVAVV NEPSHPSANN TAGVSETVGL GAASRPVYPQ 60 RQHNGSVRPS YNQHQRNNNV AATPPPPNRQ RRNNIAPGAT LPDDNRQRVG SRTRPVYQGK 120 RVAKEDNIAL TDPNLPQLVQ EIQEKLVKSS IECMICYDKV GRAANIWSCS SCYSIFHMHC 180 IKKWARAPTS IDLLAEKNQG DNWRCPGCQS VQLTSPKEIC YRCFCGKRKD PPSDPYLTPH 240 SCGEPCGKPL EKEFAAAAET TTSEDLCPHI CVLQCHPGPC PPCKAFAPPR SCPCGKKTVH 300 TRCSERRSLL VCGQRCEKLL NCGRHQCEKT CHVGPCDPCQ VLVNATCFCK KKVETVICGD 360 MNVKGELKVE DGVYSCNLNC GKPLGCGNHF CSEVCHPGPC GDCDLLPSRV KTCYCGKTRL 420 EEQTRQSCLD PIPSCSNLCS KLLPCGLHTC NELCHSGDCP PCLVQVNQKC RCGSTSRTVE 480 CYITTSSETD KFVCSKPCGR KKNCGRHRCS ERCCPLLNAK KNDLSGDWDE HVCQLPCGKK 540 LRCGQHSCES LCHSGHCPPC LEMIFTDLTC ACGNTSIPPP LPCGTPVPSC QLPCSIPQPC 600 GHSATHGCHF GDCPPCSAPV EKKCVGGHVV LRNIPCGLKD IRCNKICGKT RRCGMHACAR 660 TCHPEACDTY NESEAALRVT CGQTCSAPRR DCRHTCAALC HPSQPCPDTR CEFPVTITCS 720 CGRITATVPC DAGGGSTSNL SVDSIYEASV LQKLPTSLQP VESNGSRIPL GQRKLSCDDE 780 CAKLERKRVL QDAFDITPPN LDSLHFSENA AMTEIISDIY RRDPKWVLAV EERFKYLVLG 840 KARGSTSTLK VHVFCPMQKD KRDTVRLLAE RWKLAVSNAG WEPKRFTVVH VTQKSKPPTR 900 IIGARGGAVS LGGPHPPSFD PLVDMDPRLV VSLLDLPREA NISALVLRFG GECELVWLND 960 KNALAVFHDH ARAATAMRRL DHGSVYHGAV VVQNGQQSPS LGGNAWGKLP SSSSWDVQKA 1020 NPWKKAVIQE SDENWGAEDS PIGGSSTDIQ AAAWRSATSN NPVVTSVNRW SVLEPETPNT 1080 SGLQPLVRTE GSSSSKAAGK QPVEGSSEEV VDDWEKVCE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.16612 | 0.0 | leaf| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00100395001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013645885.1 | 0.0 | NF-X1-type zinc finger protein NFXL1 isoform X1 | ||||
Refseq | XP_022558369.1 | 0.0 | NF-X1-type zinc finger protein NFXL1 isoform X1 | ||||
Swissprot | Q9SY59 | 0.0 | NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1 | ||||
TrEMBL | A0A3P6F439 | 0.0 | A0A3P6F439_BRAOL; Uncharacterized protein (Fragment) | ||||
STRING | Bo5g010600.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5955 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10170.1 | 0.0 | NF-X-like 1 |
Link Out ? help Back to Top | |
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Entrez Gene | 106350560 |
Publications ? help Back to Top | |||
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