PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00100330001

Common Name

GSBRNA2T00100330001, LOC106410750

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

BBR-BPC

Protein Properties

Length: 270aa MW: 30443.6 Da PI: 9.4544

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00100330001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	305	2.7e-93	9	269	15	301
GAGA_bind 15 epaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsg 104 e++++l +++++ms++aerda+++ern al++k++a+a+rd+a++qrd a++er++a++er+n+l+al+++en l+ l + GSBRNA2T00100330001 9 EQHNALV--MNKKIMSILAERDAAVKERNEALAAKQEALAARDEALQQRDLAISERDNAIMERENALTALQHRENHLNYILDCA------ 90 4556677..99***********************************************************999755433222...... PP GAGA_bind 105 tksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksi 194 + q+ ++ ++e++ + p+++ ++e ++k+kk +k+ + ++k+kk +e+ +++ ++++ ++ ++++++ GSBRNA2T00100330001 91 --KRGGYQT---------CF-TEETHLPNPSPLSTIPHEPPNTKTKK----DRKQETARSKRKKSGGEDLNRQLASPG--KKCRKDWDCN 162 ..1111222.........11.23334444455555554444444444....222334455566666778899999999..579*** PP GAGA_bind 195 dlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvD 284 d++ln v++De+t+PvP+C+CtG+ rqCYkWGnGGWqS+CCttt+S+yPLP+++++r++Ri+grKmS+++f++lL++La+eG+dls pvD GSBRNA2T00100330001 163 DVGLNLVTFDETTMPVPMCTCTGTARQCYKWGNGGWQSSCCTTTLSQYPLPQMPNKRHSRIGGRKMSGNVFSRLLSRLAGEGHDLSSPVD 252 ************************************************************************************** PP GAGA_bind 285 LkdhWAkHGtnkfvtir 301 Lkd+WA+HGtn+++ i+ GSBRNA2T00100330001 253 LKDYWARHGTNRYIIIK 269 ************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	3.0E-131	1	269	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	5.3E-91	8	269	IPR010409	GAGA-binding transcriptional activator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MMPQHQIKEQ HNALVMNKKI MSILAERDAA VKERNEALAA KQEALAARDE ALQQRDLAIS 60 ERDNAIMERE NALTALQHRE NHLNYILDCA KRGGYQTCFT EETHLPNPSP LSTIPHEPPN 120 TKTKKDRKQE TARSKRKKSG GEDLNRQLAS PGKKCRKDWD CNDVGLNLVT FDETTMPVPM 180 CTCTGTARQC YKWGNGGWQS SCCTTTLSQY PLPQMPNKRH SRIGGRKMSG NVFSRLLSRL 240 AGEGHDLSSP VDLKDYWARH GTNRYIIIK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.12953	0.0	microspore\| seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. {ECO:0000269\|PubMed:14731261}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00480	DAP	Transfer from AT4G38910	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00100330001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013598019.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE5-like isoform X1
Refseq	XP_013598020.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE5-like isoform X2
Refseq	XP_013598021.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE5-like isoform X2
Refseq	XP_013706798.1	0.0	protein BASIC PENTACYSTEINE5 isoform X1
Refseq	XP_013706799.1	0.0	protein BASIC PENTACYSTEINE5 isoform X2
Refseq	XP_013706800.1	0.0	protein BASIC PENTACYSTEINE5 isoform X2
Swissprot	F4JUI3	1e-155	BPC5_ARATH; Protein BASIC PENTACYSTEINE5
TrEMBL	A0A0D3DIF6	0.0	A0A0D3DIF6_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6F1T2	0.0	A0A3P6F1T2_BRAOL; Uncharacterized protein
STRING	Bo7g119540.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4090	26	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38910.1	1e-146	basic pentacysteine 5

Link Out ? help Back to Top
Entrez Gene	106410750

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]