PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00100193001

Common Name

GSBRNA2T00100193001, LOC106408999

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LBD

Protein Properties

Length: 233aa MW: 25222.1 Da PI: 8.7269

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00100193001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	90.2	2.7e-28	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr++C++ C+l+p++ +++q +++ +v+k+FG++ ++++++a+pe +r+++++sl++eA+ r+ +P +Gavg++ ++++ GSBRNA2T00100193001 2 SCNGCRVLRKGCSETCILRPCLqwiesAESQGHATLFVAKFFGRAGLMSFISAVPELNRPALFQSLLFEACGRTVNPANGAVGILGAGNW 91 6*******************9999777889****************************************************** PP DUF260 86 qleqlkaelall 97 +++q+++e++l+ GSBRNA2T00100193001 92 HVCQAAVETVLR 103 ****998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.57	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-23	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MSCNGCRVLR KGCSETCILR PCLQWIESAE SQGHATLFVA KFFGRAGLMS FISAVPELNR 60 PALFQSLLFE ACGRTVNPAN GAVGILGAGN WHVCQAAVET VLRGGTLRPI SDLLESPSLI 120 SSNYSSEICN DIGRFSTSRT KLSTSDMKKP PVNRKRSKAE RSESVMDVQL NHGLDLTIPV 180 VPVPLLPPTP FRKVVNGERP GSPSEESVTT SCCENGIIGY NKRERKLLNL FV*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.23312	0.0	seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00100193001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473874	1e-126	AB473874.1 Arabidopsis thaliana ASL41 mRNA for ASYMMETRIC LEAVES2-like 41 protein, complete cds.
GenBank	AY072144	1e-126	AY072144.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds.
GenBank	AY122976	1e-126	AY122976.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013595574.1	1e-170	PREDICTED: LOB domain-containing protein 39-like
Refseq	XP_013705142.1	1e-170	LOB domain-containing protein 39
Swissprot	Q9SZE8	1e-120	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A0D3DI60	1e-168	A0A0D3DI60_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6FD69	1e-169	A0A3P6FD69_BRAOL; Uncharacterized protein
STRING	Bo7g118580.1	1e-169	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM821	28	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	1e-111	LOB domain-containing protein 39

Link Out ? help Back to Top
Entrez Gene	106408999

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]