PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00100169001
Common NameGSBRNA2T00100169001, LOC106409250
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 266aa    MW: 29041.6 Da    PI: 6.9977
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00100169001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding635.9e-201358147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +g+W++eEd+ll ++v+++G+++W++I++ ++ gR++k+c++rw + 
  GSBRNA2T00100169001 13 KGPWSPEEDDLLQKLVEKHGPKNWSLISKSIP-GRSGKSCRLRWCNQ 58
                         79******************************.***********985 PP
2Myb_DNA-binding52.41.2e-1668109447
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +++eEde +v+a++++G++ W+t++r +  gRt++ +k++w++ 
  GSBRNA2T00100169001  68 FSPEEDEMIVRAHARYGNK-WATVSRLLS-GRTDNAVKNHWNST 109
                          89*****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.549863IPR017930Myb domain
SuperFamilySSF466892.28E-3110106IPR009057Homeodomain-like
SMARTSM007173.0E-181261IPR001005SANT/Myb domain
PfamPF002496.2E-201358IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-261466IPR009057Homeodomain-like
CDDcd001671.72E-171557No hitNo description
SMARTSM007171.4E-1364112IPR001005SANT/Myb domain
PROSITE profilePS5129419.03365114IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-2167113IPR009057Homeodomain-like
PfamPF002491.3E-1368109IPR001005SANT/Myb domain
CDDcd001672.70E-1168110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MSGPTRKNME RIKGPWSPEE DDLLQKLVEK HGPKNWSLIS KSIPGRSGKS CRLRWCNQLS  60
PEVEHRGFSP EEDEMIVRAH ARYGNKWATV SRLLSGRTDN AVKNHWNSTL KRKCTPEGHD  120
GNLGEEQPSK RAASGGVCTG LYMSPGSPAG SDVSASDGGD PPTYLSLSLP WNNGCDTETV  180
GINGDTVIDG GYTAELFPVR KEEERGIVGG EFMTAVQEMV RTEVRSYMAE LQRGNVGGGL  240
CIPQSVNSCR VGFREFIVNQ IGKME*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-40101141105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00100169001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667421e-104KC966742.1 Brassica napus MYB transcription factor 73 (MYB73.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013705361.10.0transcription factor MYB44
SwissprotO231601e-141MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A0D3DI470.0A0A0D3DI47_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EUG60.0A0A3P6EUG6_BRAOL; Uncharacterized protein
STRINGBo7g118450.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-143myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]