PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00100162001

Common Name

GSBRNA2T00100162001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 875aa MW: 98302.1 Da PI: 5.0829

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00100162001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	92.7	3e-29	179	232	3	56
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 r++W+++LH+rFv+a++++GGs++AtPk+i+++mkv+gLt++++kSHLQkYR++ GSBRNA2T00100162001 179 RRKWSEDLHRRFVDALQKIGGSQVATPKQIRDIMKVDGLTNDEIKSHLQKYRMH 232 99**************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.71	174	234	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-25	175	235	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.16E-14	175	235	IPR009057	Homeodomain-like
Pfam	PF00249	6.9E-6	179	230	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	8.2E-25	179	232	IPR006447	Myb domain, plants
Gene3D	G3DSA:3.40.50.1440	9.1E-24	335	420	IPR003008	Tubulin/FtsZ, GTPase domain
SuperFamily	SSF52490	1.19E-33	335	412	IPR003008	Tubulin/FtsZ, GTPase domain
Pfam	PF10644	2.2E-36	336	456	IPR019605	Misato Segment II tubulin-like domain
CDD	cd06060	3.10E-151	336	858	No hit	No description
Pfam	PF14881	2.1E-22	476	648	IPR029209	DML1/Misato, tubulin domain
SuperFamily	SSF52490	1.19E-33	479	649	IPR003008	Tubulin/FtsZ, GTPase domain
Gene3D	G3DSA:3.40.50.1440	9.1E-24	487	652	IPR003008	Tubulin/FtsZ, GTPase domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003924	Molecular Function	GTPase activity

Sequence ? help Back to Top
Protein Sequence Length: 875 aa Download sequence Send to blast
MVQTDTDRRM GLNLNISHYS LAKPLSQFLN DVSKIKDNHS KLFEIDGYVG KLEEERKKID 60 VFKRELPLCM LLMNEAIERL KQEASSVQGV ELETDNKKNW MSSAQLWISN TNSQFQSTNE 120 EEDRCVTHNN ANQRGAILSF NVPPPPPPTA PLSLPTSEIL TDYSSRIEQS HPIQKKELRR 180 KWSEDLHRRF VDALQKIGGS QVATPKQIRD IMKVDGLTND EIKSHLQKYR MHIRKHPLHP 240 AKILIASDQH GLLDRETQNL DSPQGPLVDR GCWFSNNGGH SSEEEEKSDG RSWRSGSRRK 300 RQGPCRIIGF KHNQSQELYA VELETGVFVV GERRMREIVT IQVGEFANFV GSHFWNFQDE 360 LLGLASDPES DPIFRNNNLD MDVLYRSGET QQGVSTYTPR LLSINFKGSL GSMSSHGTLY 420 NQASSSRSDS SQTWFGDVDT QRSEPRKRNL FQQSLYEEEA TATEIEDKDI VGSLDETVEC 480 WTDFSKSHYH PQSLYELNGL WMDSHDFNNY GAGKDLFSEA SRGDEICDKL RFFVEECDHI 540 QGVNFLVDDS GGFSPLAGDF LETMADDYTN VPVLLYSLRS PVSQKKTVIN KLHDAVSFSR 600 LSSFCKLFTP IGLPSLTGMK YLSLGDEKPY RSSAVYAAAL HSSTLPFRMQ HTSSDSSEVS 660 NAMDVNTLVQ LLTNRGRQNI VAILDSAMPL EKTLLTNLQT LTPEVTEDVE DNQSVESMCI 720 LGALGSEDQE ATVSEVRNAV DASYDEQRPL FCNLSVSRVP LPVPLPFPSI FGNLVGRKGE 780 ILSSPASDLM CRGSLDVHSV PVATRWRSSS AVLPFLESRM VNLEKLGIQW GAVGSDVVRA 840 WGFGREELQE MRENLAKMVS ELSPHQFSES EDSD*

Sequence ? help Back to Top

Protein Sequence Length: 875 aa Download sequence Send to blast

MVQTDTDRRM GLNLNISHYS LAKPLSQFLN DVSKIKDNHS KLFEIDGYVG KLEEERKKID  60
VFKRELPLCM LLMNEAIERL KQEASSVQGV ELETDNKKNW MSSAQLWISN TNSQFQSTNE  120
EEDRCVTHNN ANQRGAILSF NVPPPPPPTA PLSLPTSEIL TDYSSRIEQS HPIQKKELRR  180
KWSEDLHRRF VDALQKIGGS QVATPKQIRD IMKVDGLTND EIKSHLQKYR MHIRKHPLHP  240
AKILIASDQH GLLDRETQNL DSPQGPLVDR GCWFSNNGGH SSEEEEKSDG RSWRSGSRRK  300
RQGPCRIIGF KHNQSQELYA VELETGVFVV GERRMREIVT IQVGEFANFV GSHFWNFQDE  360
LLGLASDPES DPIFRNNNLD MDVLYRSGET QQGVSTYTPR LLSINFKGSL GSMSSHGTLY  420
NQASSSRSDS SQTWFGDVDT QRSEPRKRNL FQQSLYEEEA TATEIEDKDI VGSLDETVEC  480
WTDFSKSHYH PQSLYELNGL WMDSHDFNNY GAGKDLFSEA SRGDEICDKL RFFVEECDHI  540
QGVNFLVDDS GGFSPLAGDF LETMADDYTN VPVLLYSLRS PVSQKKTVIN KLHDAVSFSR  600
LSSFCKLFTP IGLPSLTGMK YLSLGDEKPY RSSAVYAAAL HSSTLPFRMQ HTSSDSSEVS  660
NAMDVNTLVQ LLTNRGRQNI VAILDSAMPL EKTLLTNLQT LTPEVTEDVE DNQSVESMCI  720
LGALGSEDQE ATVSEVRNAV DASYDEQRPL FCNLSVSRVP LPVPLPFPSI FGNLVGRKGE  780
ILSSPASDLM CRGSLDVHSV PVATRWRSSS AVLPFLESRM VNLEKLGIQW GAVGSDVVRA  840
WGFGREELQE MRENLAKMVS ELSPHQFSES EDSD*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.7186	0.0	microspore-derived embryo\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00100162001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK229676	1e-115	AK229676.1 Arabidopsis thaliana mRNA for tubulin-like protein, complete cds, clone: RAFL19-92-I18.
GenBank	AK317220	1e-115	AK317220.1 Arabidopsis thaliana AT4G37190 mRNA, complete cds, clone: RAFL22-03-N02.
GenBank	BT023731	1e-115	BT023731.1 Arabidopsis thaliana At4g37190 gene, complete cds.
GenBank	BT033152	1e-115	BT033152.1 Arabidopsis thaliana unknown protein (At4g37190) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013593210.1	0.0	PREDICTED: protein misato homolog 1-like
Refseq	XP_013703484.1	0.0	protein misato homolog 1-like
TrEMBL	A0A0D3DI28	0.0	A0A0D3DI28_BRAOL; Uncharacterized protein
STRING	Bo7g118260.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	1e-118	G2-like family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]