PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00100145001
Common NameGSBRNA2T00100145001, LOC106409685
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 218aa    MW: 25228.1 Da    PI: 4.9585
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00100145001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.3e-2059111557
                          SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                          +++++eq++ Le  F  ++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  GSBRNA2T00100145001  59 RKLSDEQVNMLEMSFGDEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWKN 111
                          5899***********************************************95 PP
2HD-ZIP_I/II123.21.3e-3957147292
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          +kr+ls+eqv++LE+sF  e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y+ Lk+++++++++++rLe+e  +L+e+l
  GSBRNA2T00100145001  57 RKRKLSDEQVNMLEMSFGDEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWKNKRLEEEYNNLKNSHENVVADKCRLESELLQLKEQL 146
                          8***************************************************************************************99 PP

          HD-ZIP_I/II  92 k 92 
                           
  GSBRNA2T00100145001 147 Y 147
                          7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.3E-1955116IPR001356Homeobox domain
CDDcd000866.59E-1757113No hitNo description
PROSITE profilePS5007116.50357112IPR001356Homeobox domain
SuperFamilySSF466893.08E-1858122IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-2159119IPR009057Homeodomain-like
PfamPF000463.9E-1759111IPR001356Homeobox domain
PRINTSPR000316.0E-68392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000316.0E-692108IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MNHTMDDDQN LAFISQLYPD VYTQILPQEG AVKPPKRRRK KSKRAVATGD GSNCFFRKRK  60
LSDEQVNMLE MSFGDEHKLE SERKDKLAAE LGLDPRQVAV WFQNRRARWK NKRLEEEYNN  120
LKNSHENVVA DKCRLESELL QLKEQLYDAE REIQRLAERV ERGASNSPIS SSVSVEANET  180
PFFGDYNVGD DGDDYNLFYP VPENTYIDGV EWANIYI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13543KRRRKKSKR
23859RKKSKRAVATGDGSNCFFRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.79350.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00100145001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895491e-119AC189549.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005C21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596505.11e-162PREDICTED: homeobox-leucine zipper protein ATHB-40-like isoform X1
RefseqXP_013705721.11e-162homeobox-leucine zipper protein ATHB-40
SwissprotO232081e-123ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A0D3DI161e-160A0A0D3DI16_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F1H11e-160A0A3P6F1H1_BRAOL; Uncharacterized protein
STRINGBo7g118140.11e-161(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22082677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.12e-95homeobox protein 40
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]