PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00100101001 | ||||||||
Common Name | GSBRNA2T00100101001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 282aa MW: 31494.8 Da PI: 9.7434 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 22.8 | 1.9e-07 | 201 | 222 | 5 | 26 |
CHHHCHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKka 26 +r +r++kNRe+A rsR+RK++ GSBRNA2T00100101001 201 RRNKRMIKNRESAARSRARKQE 222 699*****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 5.9E-10 | 192 | 264 | No hit | No description |
SMART | SM00338 | 1.3E-5 | 195 | 272 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 5.43E-22 | 201 | 258 | No hit | No description |
SuperFamily | SSF57959 | 6.67E-6 | 201 | 259 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 204 | 219 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MLFSANHQRN NRVSATSKNK TLNKVSSISS SSSPSHPQDS QSQKKSLVTM EDVWKDINLG 60 SIHSQHPRGN HEPRFGSHNH HNQNPNSIFQ DFLNRPLNQE PTIPTSLTMS SSSNGDTTTV 120 TALLSSSPLE PPATVLSLNS GAGFEFLDNQ DPLVTPNYNL HSHNHLTNIP SFNTSFEALD 180 TPTCFGKKRG QESNEEGSGN RRNKRMIKNR ESAARSRARK QECFCLFDYN LQAYTNELEL 240 KVAHLKAENA RLMRQQDQVK IEAENQQPKK NTLQRASTAP F* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in shoot apex. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980, ECO:0000269|PubMed:25661797}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00100101001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022561691.1 | 0.0 | protein FD-like | ||||
Swissprot | Q84JK2 | 1e-125 | FD_ARATH; Protein FD | ||||
TrEMBL | A0A3P6EUA5 | 0.0 | A0A3P6EUA5_BRAOL; Uncharacterized protein | ||||
STRING | Bra017735.1-P | 1e-164 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1934 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35900.1 | 1e-120 | bZIP family protein |