PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00100063001

Common Name

GSBRNA2T00100063001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 902aa MW: 100709 Da PI: 7.3793

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00100063001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91	8.9e-29	605	655	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i le+l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ GSBRNA2T00100063001 605 EKTIGLEVLRQYFAGSLKDAAKNIGVCPTTLKRICRQHGITRWPSRKIKKV 655 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.041	594	675	IPR003035	RWP-RK domain
Pfam	PF02042	1.8E-24	608	655	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.21E-23	791	885	No hit	No description
PROSITE profile	PS51745	28.339	798	883	IPR000270	PB1 domain
SMART	SM00666	9.1E-28	798	883	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	6.2E-23	799	882	No hit	No description
CDD	cd06407	4.93E-40	800	882	No hit	No description
Pfam	PF00564	5.1E-19	800	882	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 902 aa Download sequence Send to blast
MEGGSSGGHG SFLPNSSFGA FSETATNMDF MDELFFDGCW LETTDGKSLK QTTPTNMNDN 60 NNNNNNSFLY ETERKFPQIT PGSLKIEDLT NRPMNQVPSY QFTAMSSTQA EKSLLEETER 120 GKRWWIAPRT RQGPSSSVKE RLVQAIKGLN EAVQDKDSLI QIWVPIQQEG KNFLTTLEQP 180 HSFNPKHLSL KRYRDASVAY NFLADEDSKE SVGLPGRVFL GKLPEWTPDV RFFRSEEYPR 240 IKEAQKCDVR GSLALPVFEK GSGICLGVVE IVRTTQKMNY KPELDNICKA LEAVNLRSSE 300 NLKSPSSEFL QVYNQFYYAA LPEVSNFLAS VCRSYDLPLA LTWAPCARQE GRGGSRHSDE 360 NFSECVSTVD SACFVLDQQS YHFQVACSEH HLLQGEGIVG KAFKRTKLFF VPEVTTFSKT 420 NYSLAHHAKI SGLHAALAVP LKNKFNGSVE FVLEFFFPKT CLDTEAQQEM LKSLSVSLQN 480 DFRSLNLVID KELELEVVFP VREELLFSEK PLPLEPFPLE EISQEDSSWI SHMIKANEKG 540 KGVSLSWEYQ KEEPKEEFML TSGWDNNNQI CLGRGHSSFD SASFGVGQPL LGSRRQGEKR 600 RTKTEKTIGL EVLRQYFAGS LKDAAKNIGV CPTTLKRICR QHGITRWPSR KIKKVGHSLK 660 KLQLVIDSVQ GVQGSIQLDS FYTSFPELSS QNVSGIGTGT YFKNVQTENG VSAQGIASKS 720 PPSSSCSHSS GSSTCCSTEA NNTANTLTTL MAENAGEILK RARSEVKLHT MEETKPISRT 780 LSHKTFSQHP LSSKVGGGSK VKATFGEAKV RFTLLPTWGF RELRHEIARR FNIDNNNIAT 840 FDLKYLDDDK EWVLLTCEAD LEECIDIYRS SQSRTIKISV HEASQVKLRG SFGSTGPGPS 900 L*

Sequence ? help Back to Top

Protein Sequence Length: 902 aa Download sequence Send to blast

MEGGSSGGHG SFLPNSSFGA FSETATNMDF MDELFFDGCW LETTDGKSLK QTTPTNMNDN  60
NNNNNNSFLY ETERKFPQIT PGSLKIEDLT NRPMNQVPSY QFTAMSSTQA EKSLLEETER  120
GKRWWIAPRT RQGPSSSVKE RLVQAIKGLN EAVQDKDSLI QIWVPIQQEG KNFLTTLEQP  180
HSFNPKHLSL KRYRDASVAY NFLADEDSKE SVGLPGRVFL GKLPEWTPDV RFFRSEEYPR  240
IKEAQKCDVR GSLALPVFEK GSGICLGVVE IVRTTQKMNY KPELDNICKA LEAVNLRSSE  300
NLKSPSSEFL QVYNQFYYAA LPEVSNFLAS VCRSYDLPLA LTWAPCARQE GRGGSRHSDE  360
NFSECVSTVD SACFVLDQQS YHFQVACSEH HLLQGEGIVG KAFKRTKLFF VPEVTTFSKT  420
NYSLAHHAKI SGLHAALAVP LKNKFNGSVE FVLEFFFPKT CLDTEAQQEM LKSLSVSLQN  480
DFRSLNLVID KELELEVVFP VREELLFSEK PLPLEPFPLE EISQEDSSWI SHMIKANEKG  540
KGVSLSWEYQ KEEPKEEFML TSGWDNNNQI CLGRGHSSFD SASFGVGQPL LGSRRQGEKR  600
RTKTEKTIGL EVLRQYFAGS LKDAAKNIGV CPTTLKRICR QHGITRWPSR KIKKVGHSLK  660
KLQLVIDSVQ GVQGSIQLDS FYTSFPELSS QNVSGIGTGT YFKNVQTENG VSAQGIASKS  720
PPSSSCSHSS GSSTCCSTEA NNTANTLTTL MAENAGEILK RARSEVKLHT MEETKPISRT  780
LSHKTFSQHP LSSKVGGGSK VKATFGEAKV RFTLLPTWGF RELRHEIARR FNIDNNNIAT  840
FDLKYLDDDK EWVLLTCEAD LEECIDIYRS SQSRTIKISV HEASQVKLRG SFGSTGPGPS  900
L*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00100063001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189656	0.0	AC189656.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS015K01, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013643252.2	0.0	protein NLP2 isoform X1
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	A0A3P6EY07	0.0	A0A3P6EY07_BRAOL; Uncharacterized protein
STRING	Bo7g117300.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]