PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00099861001 | ||||||||
Common Name | GSBRNA2T00099861001, LOC106453554 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 910aa MW: 100917 Da PI: 5.3684 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.8 | 1e-17 | 32 | 78 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l GSBRNA2T00099861001 32 KGQWTAEEDEVLCKAVERFQGKNWKKIAECFK-DRTDVQCLHRWQKVL 78 799****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 61 | 2.5e-19 | 84 | 130 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+ ++ +v+++G++ W+tI+++++ gR +kqc++rw+++l GSBRNA2T00099861001 84 KGPWSKEEDDTIIALVEKYGPKKWSTISQHLP-GRIGKQCRERWHNHL 130 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 47.2 | 5.2e-15 | 136 | 178 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ l++a++ +G++ W+ + ++ gR+++++k++w+ GSBRNA2T00099861001 136 KNAWTQEEEVTLIRAHQIYGNK-WAELTKFLP-GRSDNSIKNHWN 178 689*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.067 | 27 | 78 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-14 | 31 | 80 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-14 | 32 | 78 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.65E-15 | 33 | 88 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-21 | 33 | 90 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.26E-13 | 35 | 78 | No hit | No description |
PROSITE profile | PS51294 | 32.541 | 79 | 134 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.87E-31 | 81 | 177 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-18 | 83 | 132 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-18 | 84 | 130 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.59E-16 | 86 | 130 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.2E-27 | 91 | 137 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.066 | 135 | 185 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-14 | 135 | 183 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-13 | 136 | 179 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-21 | 138 | 185 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.12E-11 | 138 | 178 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 910 aa Download sequence Send to blast |
MKSEMKAPTI PQEGSKKGSH GRPCGPARRS TKGQWTAEED EVLCKAVERF QGKNWKKIAE 60 CFKDRTDVQC LHRWQKVLNP ELVKGPWSKE EDDTIIALVE KYGPKKWSTI SQHLPGRIGK 120 QCRERWHNHL NPGINKNAWT QEEEVTLIRA HQIYGNKWAE LTKFLPGRSD NSIKNHWNSS 180 VKKKLDSYYA SGLLDQSQSS PLIPIQNNSI ASSSSWMHSS GDEGNFRPGA DAEESECSQA 240 STVFSCSQST NDLLDEAKPA KEEFYIPELP SGTEQQISNS PSHAESYYPS FEDVLPEISC 300 EAESSKEYQN HNGLTEVRTT AATEDHLQAV CNNDKQDRDL DCPQLLGDEK NEACQAFQNS 360 VRLTDQPSMP NSDTCMHPQP QTLITDEECC RVLFTNTTED SGVASNAQGQ NLVEPQKGKG 420 SIPASETENI PALSWHPSNS NDSVQDCHLI EATALERKVD TNDSFINTDG HVTSHGKDDN 480 EGIPDQLEPS YIPKDSLKLV PLNSFTSPSR VNKINFPVND KPAEKDKGSL CYEPPRFPSA 540 DIPFFSCDLV PSNSDVRQEY SPFGIRQLMM NCATPLRLWD SPCRNKSPDV MLKDAAKSFS 600 GTPSILKKRQ HRDLMSPVLD RRKEKLLKSA EASSLAKDFS RLDVMLNGCS SSILSERPDN 660 RNEHASSSEA KKDPKETLES GGVTSAKIDQ ETRRSLVYCN DVEMQLSSPD KSGSRPDNKV 720 NTTASEPPFT VDPIPLSAIA GNKTNNAESS FDIIENCSIF DGTPFKQLLD TPSPWKSPLL 780 FGSFLQSPRL PPEITFEDIG CFMSPGDRSY DAIGLMKHLS EHTATAYADA LEVLGNDTPE 840 TILKKRQLNK SIQGKENQHW SHDQLENRSQ VECRALDFSD CGTPGKAKVS SASPGGYSSP 900 SSYLLKSCR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-66 | 32 | 185 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-66 | 32 | 185 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates in the columella root cap. Also present in floral organs in young flower buds. Strongly expressed in vascular tissues of filaments and anthers. Weakly and uniformly present in the developing embryo and maternal tissues (PubMed:17287251). Expressed both in proliferating and maturing stages of leaves (PubMed:26069325). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:26069325}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed ubiquitously at low levels (PubMed:10743663). Expressed in roots, cotyledons, flowers and leaves, especially in vascular tissues (PubMed:17287251). {ECO:0000269|PubMed:10743663, ECO:0000269|PubMed:17287251}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00099861001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Constant levels during cell cycle. Activated by CYCB1. {ECO:0000269|PubMed:17287251}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022562820.1 | 0.0 | transcription factor MYB3R-1 | ||||
Swissprot | Q9S7G7 | 0.0 | MB3R1_ARATH; Transcription factor MYB3R-1 | ||||
TrEMBL | A0A0D3DHD3 | 0.0 | A0A0D3DHD3_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g115810.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4674 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.2 | 0.0 | Homeodomain-like protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106453554 |
Publications ? help Back to Top | |||
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