PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00099812001
Common NameGSBRNA2T00099812001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 369aa    MW: 42463.6 Da    PI: 9.1788
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00099812001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.22.7e-17291031294
                          HTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3  12 ksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                           ++ l++p  f+++h +gk +e+++ +l++  s ++W+v++  ++++    +t+GWk+F+ a++L+ gD+++F+++g++ f  +v
  GSBRNA2T00099812001  29 DTH-LTIPVAFFSKHiEGK-NEQRKAKLRShASDKTWKVTI--DGRR----FTRGWKDFATAHDLRIGDVIIFRHEGDMVF--NV 103
                          555.9**********7444.46679999997888*******..9998....9***********************999988..54 PP
2B372.36.2e-23151244498
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                          + +++++l+++ l lp +  +++ ++k+++ ++++ +++g+sW+v l++r +sg+y++++GW++F+++n+ k gD +vF l+g+ +++++
  GSBRNA2T00099812001 151 AQVTASNLRLDTLDLPMEAESSNALNKRCH-EMIVVNKEGNSWTVSLRFRESSGSYYIRGGWRRFCRDNRRKIGDLMVFNLVGDGKTSPM 239
                          4568999*************9*****9887.9999*************************************************9999** PP

                          EEEE- CS
                   B3  94 vkvfr 98 
                          + ++ 
  GSBRNA2T00099812001 240 ICICP 244
                          **997 PP
3B348.71.4e-15272367197
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTE.EEE-TTHHHHHHHHT--.TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgr.yvltkGWkeFvkangLk.egDfvvFkldg 86 
                          f+++ ++ ++++s+ l+lp +f++ +g+k + + +++l+d++g +W  kl    +  + +   l+kGWk+F++an++   g  ++++l++
  GSBRNA2T00099812001 272 FVTISLTRYNFRSSKLILPATFMKINGIK-R-QNEIILMDKHGVRWVTKLVKdgS--KYGkRGLGKGWKDFCEANDVLkIGQPFLLELVW 357
                          7788899****************655555.4.459***************77433..3333579***********9644**********9 PP

                          SSEE..EEEEE CS
                   B3  87 rsefelvvkvf 97 
                           +++ +v+k++
  GSBRNA2T00099812001 358 -EDTLPVLKFC 367
                          .5555888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.1E-2314111IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-2115115IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.42117109IPR003340B3 DNA binding domain
CDDcd100172.10E-1518106No hitNo description
SMARTSM010191.8E-2220109IPR003340B3 DNA binding domain
PfamPF023621.8E-1131101IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-19147240IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.5E-19148236IPR015300DNA-binding pseudobarrel domain
CDDcd100179.48E-20148244No hitNo description
PROSITE profilePS5086314.17148246IPR003340B3 DNA binding domain
SMARTSM010194.0E-23149246IPR003340B3 DNA binding domain
PfamPF023621.0E-21151244IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.8E-19264367IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-18266367IPR015300DNA-binding pseudobarrel domain
CDDcd100175.48E-13271368No hitNo description
PfamPF023621.8E-14272368IPR003340B3 DNA binding domain
SMARTSM010191.8E-19272368IPR003340B3 DNA binding domain
PROSITE profilePS5086311.209272368IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MNCLNSMANP PLESPTNPHF FQPLLPGFDT HLTIPVAFFS KHIEGKNEQR KAKLRSHASD  60
KTWKVTIDGR RFTRGWKDFA TAHDLRIGDV IIFRHEGDMV FNVTPFGPSC CEIHYEQSHL  120
IKEEEFDNND DDNENHCRTK SSFSFDYCFV AQVTASNLRL DTLDLPMEAE SSNALNKRCH  180
EMIVVNKEGN SWTVSLRFRE SSGSYYIRGG WRRFCRDNRR KIGDLMVFNL VGDGKTSPMI  240
CICPEEECSE LVRKAKRRSK WVASSSSRRN RFVTISLTRY NFRSSKLILP ATFMKINGIK  300
RQNEIILMDK HGVRWVTKLV KDGSKYGKRG LGKGWKDFCE ANDVLKIGQP FLLELVWEDT  360
LPVLKFCS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00099812001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022569616.10.0B3 domain-containing protein REM7-like
RefseqXP_022569617.10.0B3 domain-containing protein REM7-like
TrEMBLA0A3P6A3W00.0A0A3P6A3W0_BRACM; Uncharacterized protein
STRINGBra023988.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.11e-88B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]