PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00099806001
Common NameGSBRNA2T00099806001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 519aa    MW: 58097 Da    PI: 6.7496
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00099806001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.22.9e-13221001297
                          HTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3  12 ksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                          ++++ ++p +f+++h  g +  +s++l+l++  s r+Wev+l  ++++    +++GWk+F + + +++ D++ F+ dg++ f  +v+ f
  GSBRNA2T00099806001  22 QNSNPMIPDSFVSNHlkG-N-IQSTKLKLTSdASDRTWEVEL--DGQR----FARGWKHFSDHHCVRSDDVLSFRQDGDMVF--HVTPF 100
                          455689*********844.3.48889999987899*******..8888....9**********************8888887..76655 PP
2B365.11e-20183270796
                          .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                          ++++l+++ ++lp kfa+++g+++++  ++ l++e+g+sW++ l++ k+ g+ + ++GW +F+kang+k+  f  Fkl++ +++++v+++
  GSBRNA2T00099806001 183 TPSSLSRNHMYLPSKFARANGLNNRQ-CEIDLRNEHGKSWTLDLTHHKSTGQAFVRNGWTSFCKANGIKAESFRRFKLVQ-TGTKPVLQL 270
                          566677777***********999766.5**************************************************98.777788776 PP
3B3391.4e-12301391699
                          ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--.TT-EEEEEE-SSSEE.. CS
                   B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLk.egDfvvFkldgrsefel 92 
                          ++++++ksgr+++p +f +++g+++++  ++t+ +++g +W++ l   + +gr  ++++ G ++   ang+k +gD+++++ ++  + ++
  GSBRNA2T00099806001 301 LKPYMFKSGRVRVPASFGRANGINEAG--KITIVNKDGVEWKLHL--GNMKGRelFYIR-GLRNCFVANGIKkVGDSFTLEAIR-GGPNP 384
                          689*******************99877..69999***********..444444446666.***********99********997.78889 PP

                          EEEEE-S CS
                   B3  93 vvkvfrk 99 
                           +k+++k
  GSBRNA2T00099806001 385 ILKICSK 391
                          ****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-147101IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-129102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.85611103IPR003340B3 DNA binding domain
SMARTSM010191.1E-1214103IPR003340B3 DNA binding domain
PfamPF023622.9E-72395IPR003340B3 DNA binding domain
CDDcd100172.87E-1027100No hitNo description
Gene3DG3DSA:2.40.330.101.1E-20170273IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-19173274IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.9E-25177274IPR003340B3 DNA binding domain
PROSITE profilePS5086313.831177273IPR003340B3 DNA binding domain
PfamPF023621.2E-19182270IPR003340B3 DNA binding domain
CDDcd100178.49E-19183270No hitNo description
Gene3DG3DSA:2.40.330.101.1E-7292390IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-7293390IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.797296392IPR003340B3 DNA binding domain
SMARTSM010193.0E-13296392IPR003340B3 DNA binding domain
PfamPF023622.3E-12300391IPR003340B3 DNA binding domain
CDDcd100172.15E-8301390No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MVDPVMASST KKPIFILDLS GQNSNPMIPD SFVSNHLKGN IQSTKLKLTS DASDRTWEVE  60
LDGQRFARGW KHFSDHHCVR SDDVLSFRQD GDMVFHVTPF GRRFTQQIQF ISSTSEASDD  120
DDEHNIFDDD VYDDEDIGDE DVGYDDDATS EEELYPNKTL SKKRARTETE CSSENTYLVA  180
HATPSSLSRN HMYLPSKFAR ANGLNNRQCE IDLRNEHGKS WTLDLTHHKS TGQAFVRNGW  240
TSFCKANGIK AESFRRFKLV QTGTKPVLQL SPNTEGDDEI ESEDCSEPSS MNQNRIVALE  300
LKPYMFKSGR VRVPASFGRA NGINEAGKIT IVNKDGVEWK LHLGNMKGRE LFYIRGLRNC  360
FVANGIKKVG DSFTLEAIRG GPNPILKICS KEASCDGYKT PQPRMIQASR DEEEKETKVQ  420
KKARVSAVGG PSHRTRASNR SSAGPSNLQH KQPIQPCSIS DQVTKVKQSV VDALTDVRQF  480
RSELEVKERN LEAALLEIDV LVGEKIMGIS KLFNINQV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00099806001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597030.10.0PREDICTED: putative B3 domain-containing protein REM4
SwissprotQ9SB790.0REM4_ARATH; Putative B3 domain-containing protein REM4
TrEMBLA0A0D3DH830.0A0A0D3DH83_BRAOL; Uncharacterized protein
STRINGBo7g115310.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96581537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]