PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00099603001 | ||||||||
Common Name | GSBRNA2T00099603001, LOC106357034 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 177aa MW: 19404.5 Da PI: 5.2392 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.3 | 7.8e-18 | 19 | 68 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr +k +g+Wv+eIr+p + r++lg+f t+e+Aa a++ a+ ++g GSBRNA2T00099603001 19 AYRGVRKRK-WGKWVSEIREPG----TtNRIWLGSFETPEMAATAYDVAAFHFRG 68 69****999.**********83....349*********************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.42E-29 | 18 | 78 | No hit | No description |
SuperFamily | SSF54171 | 5.95E-22 | 18 | 77 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-31 | 19 | 77 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.0E-11 | 19 | 68 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.3E-36 | 19 | 82 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.011 | 19 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-12 | 20 | 31 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-12 | 58 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MSGRSNNARN DGQGGIPSAY RGVRKRKWGK WVSEIREPGT TNRIWLGSFE TPEMAATAYD 60 VAAFHFRGQG ARLNFPELVN SLPRPADSSA DSVRMAAHQA ALYLRTEPAE SAMQVDTSSS 120 SNVGTTMVRL SPREIQAINE STLGSPTMLM HSSYDDPMGF DNDVWDAYQT DSLWDP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-18 | 20 | 81 | 6 | 68 | ATERF1 |
3gcc_A | 3e-18 | 20 | 81 | 6 | 68 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00099603001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013652178.1 | 1e-129 | ethylene-responsive transcription factor ERF021 | ||||
Swissprot | Q9C9I2 | 7e-97 | ERF21_ARATH; Ethylene-responsive transcription factor ERF021 | ||||
TrEMBL | A0A3P6B3K7 | 1e-122 | A0A3P6B3K7_BRACM; Uncharacterized protein | ||||
STRING | Bra003924.1-P | 1e-122 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 3e-99 | ERF family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106357034 |
Publications ? help Back to Top | |||
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