PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00099603001
Common NameGSBRNA2T00099603001, LOC106357034
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 177aa    MW: 19404.5 Da    PI: 5.2392
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00099603001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.37.8e-181968255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                          y+GVr +k +g+Wv+eIr+p     +  r++lg+f t+e+Aa a++ a+  ++g
  GSBRNA2T00099603001 19 AYRGVRKRK-WGKWVSEIREPG----TtNRIWLGSFETPEMAATAYDVAAFHFRG 68
                         69****999.**********83....349*********************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.42E-291878No hitNo description
SuperFamilySSF541715.95E-221877IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.6E-311977IPR001471AP2/ERF domain
PfamPF008474.0E-111968IPR001471AP2/ERF domain
SMARTSM003802.3E-361982IPR001471AP2/ERF domain
PROSITE profilePS5103223.0111976IPR001471AP2/ERF domain
PRINTSPR003671.6E-122031IPR001471AP2/ERF domain
PRINTSPR003671.6E-125878IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MSGRSNNARN DGQGGIPSAY RGVRKRKWGK WVSEIREPGT TNRIWLGSFE TPEMAATAYD  60
VAAFHFRGQG ARLNFPELVN SLPRPADSSA DSVRMAAHQA ALYLRTEPAE SAMQVDTSSS  120
SNVGTTMVRL SPREIQAINE STLGSPTMLM HSSYDDPMGF DNDVWDAYQT DSLWDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-182081668ATERF1
3gcc_A3e-182081668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00099603001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013652178.11e-129ethylene-responsive transcription factor ERF021
SwissprotQ9C9I27e-97ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A3P6B3K71e-122A0A3P6B3K7_BRACM; Uncharacterized protein
STRINGBra003924.1-P1e-122(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.13e-99ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]