PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00099555001
Common NameGSBRNA2T00099555001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 325aa    MW: 36605.6 Da    PI: 5.6949
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00099555001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.51.3e-14125176155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+++  A++Y+k+L+
  GSBRNA2T00099555001 125 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YAQRGDQASVVGGAINYLKELE 176
                          79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.04E-13123180No hitNo description
SuperFamilySSF474591.15E-16124189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.209124175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-13124180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-12125176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-10130181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MALEAVVYPQ DPFSYISYKD YQFHDLYFQQ EEDRDPLETK NNVKLGQEQR QGFESIYYNG  60
NSGDNNDDYN YNDHKDLQRP RDDLPYGSIV DTENQPPTSV LATGEGRRKR RRTKSSKNKE  120
EIENQRMTHI AVERNRRKQM NEYLAVLRSL MPPSYAQRGD QASVVGGAIN YLKELEHHLQ  180
SMDPTVSTPA TKQAGDGAGD QMNTIAASSS GPFSDFFAFP QYSRRPSSSS VAEGTAEIEV  240
TMVESHANVK ILAKKRPKQL LKLVASIQSL RLTVLHLNVT TRDDSVLYSI SLKVEEGSQL  300
NTVEDIAAAV NQILRRIEED SSFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107111RKRRR
2107112RKRRRT
3125136RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00099555001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895750.0AC189575.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011C10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104863.10.0PREDICTED: transcription factor bHLH96-like
RefseqXP_013649017.10.0transcription factor bHLH96-like
SwissprotQ9C7T41e-180BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A397YYH00.0A0A397YYH0_BRACM; Uncharacterized protein
STRINGBra003886.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-164bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]