PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00099364001 | ||||||||
Common Name | GSBRNA2T00099364001, GSBRNA2T00149933001, LOC106449828 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 309aa MW: 34410.8 Da PI: 4.5709 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.6 | 8.8e-43 | 5 | 104 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrrkC+++Cv+apyfp +qp+kf +vhk+FGasnv+k+l++lp+ reda++sl+yeAear+rdP+yG+vg+i+ lqq l++ GSBRNA2T00099364001 5 PCAACKLLRRKCTQECVFAPYFPPTQPQKFIYVHKVFGASNVTKILNDLPPPSREDAVNSLYYEAEARIRDPIYGCVGLISFLQQCLKKI 94 7***************************************************************************************** PP DUF260 91 kaelallkee 100 +++l+++kee GSBRNA2T00099364001 95 QQDLVTAKEE 104 *****99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038155 | 4.0E-107 | 2 | 306 | IPR017414 | LOB domain-containing protein 10/36/41 |
PROSITE profile | PS50891 | 26.691 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.9E-41 | 5 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MASTPCAACK LLRRKCTQEC VFAPYFPPTQ PQKFIYVHKV FGASNVTKIL NDLPPPSRED 60 AVNSLYYEAE ARIRDPIYGC VGLISFLQQC LKKIQQDLVT AKEELAGYIG PDAVNPQQPY 120 LPPLANNPPP NFMMAMEGMP HGVVPQGEPL IMREPNMPQH QHQPQDEQMQ LMGTDAHRMA 180 AMILERGDQQ GMFNGYGIDN NGSVTATGFN QMDVNDHTSG GSMSGPSLAL GSFGDAYQMG 240 HETEHHISHD QLQTQLMLQP PLQEGQEQNE GQFLMQPMGQ ENLHEEEDEE ELEPPVKWRK 300 SESKEASY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-45 | 2 | 108 | 8 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-45 | 2 | 108 | 8 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00099364001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473835 | 0.0 | AB473835.1 Arabidopsis thaliana ASL2 mRNA for ASYMMETRIC LEAVES2-like 2 protein, complete cds. | |||
GenBank | AC003040 | 0.0 | AC003040.3 Arabidopsis thaliana chromosome 2 clone F26B6 map CIC06C07, complete sequence. | |||
GenBank | AC004482 | 0.0 | AC004482.3 Arabidopsis thaliana chromosome 2 clone F27L4 map CIC06C07, complete sequence. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009140479.1 | 0.0 | PREDICTED: LOB domain-containing protein 10 | ||||
Refseq | XP_009140482.1 | 0.0 | PREDICTED: LOB domain-containing protein 10 | ||||
Refseq | XP_013634802.1 | 0.0 | PREDICTED: LOB domain-containing protein 10 | ||||
Refseq | XP_013746972.1 | 0.0 | LOB domain-containing protein 10 | ||||
Refseq | XP_018513999.1 | 0.0 | PREDICTED: LOB domain-containing protein 10 | ||||
Swissprot | O64836 | 1e-175 | LBD10_ARATH; LOB domain-containing protein 10 | ||||
TrEMBL | A0A0D3C1I7 | 0.0 | A0A0D3C1I7_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A291LQY8 | 0.0 | A0A291LQY8_BRARR; Transcription factor LBD10 | ||||
TrEMBL | A0A397ZS71 | 0.0 | A0A397ZS71_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3P6CBS8 | 0.0 | A0A3P6CBS8_BRAOL; Uncharacterized protein | ||||
TrEMBL | M4ETM1 | 0.0 | M4ETM1_BRARP; Uncharacterized protein | ||||
STRING | Bra032153.1-P | 0.0 | (Brassica rapa) | ||||
STRING | Bo4g151770.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14908 | 17 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23660.2 | 1e-154 | LOB domain-containing protein 10 |
Link Out ? help Back to Top | |
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Entrez Gene | 106449828 |
Publications ? help Back to Top | |||
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