PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00099053001
Common NameGSBRNA2T00099053001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 781aa    MW: 85415.5 Da    PI: 6.6372
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00099053001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.8e-1996151156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ +++t++q++ Le++F+++ +p++++r +L+++l+L+ rqVk+WFqNrR+++k
  GSBRNA2T00099053001  96 KKRYHRHTAKQIQDLESVFKECAHPDEKQRLDLSRRLNLDPRQVKFWFQNRRTQMK 151
                          688999***********************************************999 PP
2START184.84.7e-582965152206
                          HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
                START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                          la++a++elvk+a+  ep+W +ss    e++n++e+ ++f++  +     + +ea++++g+v+ ++  lve+l+d+  +W e+++    +
  GSBRNA2T00099053001 296 LALAAMEELVKMAQRHEPLWIRSSetgfEMLNKEEYDTSFSRVVGpkqdgFVSEASKETGNVIINSLALVETLMDSE-RWAEMFPsmisR 384
                          6899************************88888888888866544888999**************************.*******9999* PP

                          EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS
                START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161
                           +t+e issg      gal+lm aelq+lsplvp R + f+R+++q+ +g+w++vdvS+ds ++ + sss+ R   lpSg+l+++++ng+
  GSBRNA2T00099053001 385 TSTTEIISSGmggtrnGALHLMHAELQLLSPLVPvRQVSFLRFCKQHAEGVWAVVDVSIDSIREGS-SSSCRR---LPSGCLVQDMANGY 470
                          *****************************************************************9.777766...************** PP

                          EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          skvtw+eh++++++ +h l+r+l++ gla+ga++w+a+lqrqce+
  GSBRNA2T00099053001 471 SKVTWIEHTEYDENRIHRLYRPLLSCGLAFGAQRWMAALQRQCEC 515
                          *******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.05E-1983153IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-2090160IPR009057Homeodomain-like
PROSITE profilePS5007117.39493153IPR001356Homeobox domain
SMARTSM003897.9E-1894157IPR001356Homeobox domain
PfamPF000464.4E-1796151IPR001356Homeobox domain
CDDcd000866.53E-16100153No hitNo description
PROSITE patternPS000270128151IPR017970Homeobox, conserved site
PROSITE profilePS5084839.893286518IPR002913START domain
SuperFamilySSF559611.29E-30289515No hitNo description
CDDcd088753.26E-112290514No hitNo description
SMARTSM002341.7E-44295515IPR002913START domain
PfamPF018527.3E-50296515IPR002913START domain
SuperFamilySSF559613.16E-18544772No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 781 aa     Download sequence    Send to blast
MNFNGYLGDG SSDVPYSDHF SFSAAATMPH SRPFSSNGLS LGLQTNGVNG EAFETNVTRN  60
KSRGGEDVES RSESDNAEAV SGDDLETGDK PPRKKKKRYH RHTAKQIQDL ESVFKECAHP  120
DEKQRLDLSR RLNLDPRQVK FWFQNRRTQM KTQIERHENA LLRQENDKLR AENMSVREAM  180
RNPMCSNCGG PAVLGEVSME EQHLRIENSR LKDELDRVCA LTGKFLGRSP SGSHHVPDSS  240
LVLGVGVGSG GGFSLSSPSL PQASPRFEIS NGTGLATVNI QAPVSDFDQR SRYLDLALAA  300
MEELVKMAQR HEPLWIRSSE TGFEMLNKEE YDTSFSRVVG PKQDGFVSEA SKETGNVIIN  360
SLALVETLMD SERWAEMFPS MISRTSTTEI ISSGMGGTRN GALHLMHAEL QLLSPLVPVR  420
QVSFLRFCKQ HAEGVWAVVD VSIDSIREGS SSSCRRLPSG CLVQDMANGY SKVTWIEHTE  480
YDENRIHRLY RPLLSCGLAF GAQRWMAALQ RQCECLTILM SSTVSPSRSP TPISCNGRKS  540
MLKLAKRMTD NFCGGVCASS LQKWSKLNVG NVDEDVRIMT RKSVNDPGEP PGIVLNAATS  600
VWMPVSPKRL FDFLGNERLR SEWDILSNGG PMQEMAHIAK GHDHSNSVSL LRATAINANQ  660
SSMLILQETS IDAAGAVVVY APVDIPAMQA VMNGGDSAYV ALLPSGFAIL PSAPQLSEER  720
NGNGSGGCME EGGSLLTVAF QILVNSLPTA KLTVESVETV NNLISCTVQK IKAALHCDSN  780
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19297RKKKKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.57780.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes forming at the base of young leaves, in endodermal cell lines around emergent lateral roots and in the epidermal layer of the stamen filament. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00099053001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1824900.0DQ182490.1 Brassica napus baby boom interacting protein 2 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013648430.10.0homeobox-leucine zipper protein HDG1
SwissprotQ9M2E80.0HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBLA0A3P6BGH20.0A0A3P6BGH2_BRACM; Uncharacterized protein
STRINGBra003439.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]