PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00098998001

Common Name

GSBRNA2T00098998001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 853aa MW: 94095 Da PI: 5.4052

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00098998001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.7	2.7e-29	510	560	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ GSBRNA2T00098998001 510 EKNVSLNVLQQYFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV 560 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.427	495	580	IPR003035	RWP-RK domain
Pfam	PF02042	2.6E-27	512	560	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.91E-22	741	836	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.4E-21	748	830	No hit	No description
SMART	SM00666	6.0E-23	750	833	IPR000270	PB1 domain
PROSITE profile	PS51745	20.217	750	833	IPR000270	PB1 domain
CDD	cd06407	2.15E-33	751	832	No hit	No description
Pfam	PF00564	1.8E-16	752	832	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 853 aa Download sequence Send to blast
MENTSPDIPA EEMDGWVKNL ISEEDMFSSS SDLVNFESFA SWCNTPSASD ILFTQYGLTT 60 SQSTTPTPFG GFTALPAELS PSFHECSVPR SLSYSLDEKM LKALSLFMEF SGEGILAQFW 120 TPVKSGDHYM LSTCDQAYLL DSRLSGYREV SRKYTFSAET SQYSSPGLPG RVFISGVPEW 180 TSNVMYYKTA EYLRMKHALD NDVRGSIAIP VLQASGSSCC AVLELVTCRE KPNFDLEMDS 240 VCRALQAVNL QTSTIPRCQY VSSNQKEALS EIRDVLRAVC HAHRLPLALA WIPCSYSKGT 300 NNEMVKVYGK KSDENSLLCI EESACYVNDM DMECFVNACM EHYLSKGQGV AGKALVSNKP 360 SFSSDVKTFD ISEYPLVQHA RKFGLNAAVA TKLRSTFTGD SDYILEFFLP VNMKGSSEQQ 420 LLLDSLSGTM QRICRTLRTV SDEVGLWSGD RMLNLTQSTV TEGSFQTTLL DTDLNYTRSI 480 FSSDIAGSHG TLQQETSGAR RPERKKSSTE KNVSLNVLQQ YFSGSLKDAA KSLGVCPTTL 540 KRICRQHGIM RWPSRKINKV NRSLKKIQTV LDSVQGVEGG LKFDSATGEF IAVGSLVQEF 600 DTQKSLPCHH DDAFLKRQCD MDEDVSLELL KVKSHDGGKV KLEDSVETNE ARPAGSLMEP 660 WVSKQSGLNY SDDFDIGTRS ADVKKDKDLG VRRCLSSLAL AEPNPSISSS ISDSSNGSGA 720 VLVRSSSTSM EQDHNQTFRT HNSSSESGSL LTVKATYRDD TIRFKLDPYV VGCSQLYKEV 780 GKRFKLQEGA YQLKYLDDDE EWVMLVTDSD LQECLEILNG MRKHTVKFLV RDIPGAAMGS 840 SGGSNGYLGT GS*

Sequence ? help Back to Top

Protein Sequence Length: 853 aa Download sequence Send to blast

MENTSPDIPA EEMDGWVKNL ISEEDMFSSS SDLVNFESFA SWCNTPSASD ILFTQYGLTT  60
SQSTTPTPFG GFTALPAELS PSFHECSVPR SLSYSLDEKM LKALSLFMEF SGEGILAQFW  120
TPVKSGDHYM LSTCDQAYLL DSRLSGYREV SRKYTFSAET SQYSSPGLPG RVFISGVPEW  180
TSNVMYYKTA EYLRMKHALD NDVRGSIAIP VLQASGSSCC AVLELVTCRE KPNFDLEMDS  240
VCRALQAVNL QTSTIPRCQY VSSNQKEALS EIRDVLRAVC HAHRLPLALA WIPCSYSKGT  300
NNEMVKVYGK KSDENSLLCI EESACYVNDM DMECFVNACM EHYLSKGQGV AGKALVSNKP  360
SFSSDVKTFD ISEYPLVQHA RKFGLNAAVA TKLRSTFTGD SDYILEFFLP VNMKGSSEQQ  420
LLLDSLSGTM QRICRTLRTV SDEVGLWSGD RMLNLTQSTV TEGSFQTTLL DTDLNYTRSI  480
FSSDIAGSHG TLQQETSGAR RPERKKSSTE KNVSLNVLQQ YFSGSLKDAA KSLGVCPTTL  540
KRICRQHGIM RWPSRKINKV NRSLKKIQTV LDSVQGVEGG LKFDSATGEF IAVGSLVQEF  600
DTQKSLPCHH DDAFLKRQCD MDEDVSLELL KVKSHDGGKV KLEDSVETNE ARPAGSLMEP  660
WVSKQSGLNY SDDFDIGTRS ADVKKDKDLG VRRCLSSLAL AEPNPSISSS ISDSSNGSGA  720
VLVRSSSTSM EQDHNQTFRT HNSSSESGSL LTVKATYRDD TIRFKLDPYV VGCSQLYKEV  780
GKRFKLQEGA YQLKYLDDDE EWVMLVTDSD LQECLEILNG MRKHTVKFLV RDIPGAAMGS  840
SGGSNGYLGT GS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00098998001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009104212.1	0.0	PREDICTED: protein NLP9
Swissprot	Q9M1B0	0.0	NLP9_ARATH; Protein NLP9
TrEMBL	M4CGP9	0.0	M4CGP9_BRARP; Uncharacterized protein
STRING	Bra003382.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]