PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00098828001 | ||||||||
Common Name | GSBRNA2T00098828001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 260aa MW: 28760.6 Da PI: 9.6847 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 39.8 | 9.9e-13 | 188 | 231 | 5 | 47 |
CHHHCHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKka.eieeLeekvkeLeaeNkaLkk 47 ++++r++kNRe+A rsR+RK++ ++ eLe v Le+eN++L+ GSBRNA2T00098828001 188 RKQKRMIKNRESAARSRARKQQaYTHELEINVSRLEEENERLRR 231 689*****************75499*****************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 5.2E-11 | 182 | 232 | No hit | No description |
SMART | SM00338 | 2.0E-6 | 184 | 257 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 7.54E-22 | 188 | 243 | No hit | No description |
SuperFamily | SSF57959 | 1.31E-7 | 188 | 234 | No hit | No description |
Pfam | PF00170 | 1.1E-9 | 188 | 232 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 191 | 206 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MDSHRVIVED PKSQFLNRQQ GSSLYTLTLD EVQTHLGSSG KPLGSMNLDE LLKSVCSVEP 60 NQPPSVAVNE GLSRQGSLAL PRAHERRDKQ GTLGEMTLED LLLKAGVVTE TIPGSNHDDP 120 GGGAGLAPWV QYHQLPSMTQ PRSFLPYLVA DMQVMVSQAS LMGGLSDTQT PGRKRVASGE 180 VVEKIVERKQ KRMIKNRESA ARSRARKQQA YTHELEINVS RLEEENERLR RQKEVEKILP 240 SAPPPDPKRQ LRRTSSAPF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 200 | 208 | ARSRARKQQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:15642716}. | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:12376636}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00098828001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189506 | 0.0 | AC189506.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB088E10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013746683.1 | 0.0 | ABSCISIC ACID-INSENSITIVE 5-like protein 2 | ||||
Swissprot | Q9LES3 | 1e-144 | AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2 | ||||
TrEMBL | A0A397YWL0 | 0.0 | A0A397YWL0_BRACM; Uncharacterized protein | ||||
STRING | Bo6g072380.1 | 1e-162 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1884 | 28 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56850.1 | 1e-130 | ABA-responsive element binding protein 3 |
Publications ? help Back to Top | |||
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