PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00098448001
Common NameGSBRNA2T00098448001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 225aa    MW: 25729.8 Da    PI: 7.5663
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00098448001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.23.9e-2067120457
                          -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                          ++++t+eq++ Le  Fe+++++   ++e++A++lgL+ rqV vWFqNrRa++k+
  GSBRNA2T00098448001  67 KRKLTDEQVNMLEFSFENEHKLESGRKEKIAAELGLDPRQVAVWFQNRRARWKN 120
                          4589************************************************95 PP
2HD-ZIP_I/II119.61.7e-3866157293
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          +kr+l++eqv++LE sFe+e+kLe+ rK+++a eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+++  +++Le++v +L e+l
  GSBRNA2T00098448001  66 RKRKLTDEQVNMLEFSFENEHKLESGRKEKIAAELGLDPRQVAVWFQNRRARWKNKKLEEEYAKLKSQHDTVVLGQCQLESQVLKLSEQL 155
                          8***************************************************************************************99 PP

          HD-ZIP_I/II  92 ke 93 
                          +e
  GSBRNA2T00098448001 156 SE 157
                          86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.9E-1864125IPR001356Homeobox domain
SuperFamilySSF466892.34E-1864123IPR009057Homeodomain-like
PROSITE profilePS5007116.35866121IPR001356Homeobox domain
CDDcd000862.45E-1666122No hitNo description
PfamPF000462.3E-1767120IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-2068128IPR009057Homeodomain-like
PRINTSPR000317.4E-692101IPR000047Helix-turn-helix motif
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
PRINTSPR000317.4E-6101117IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDQNVLGTQV YPYTTQTHGQ CIIVNQIDGS SSGEGSKPVK RRRRRRSKGS SATSEDDMTA  60
IGVMLRKRKL TDEQVNMLEF SFENEHKLES GRKEKIAAEL GLDPRQVAVW FQNRRARWKN  120
KKLEEEYAKL KSQHDTVVLG QCQLESQVLK LSEQLSEAQN EIRKLSERLA QETLTNSPSS  180
PRSVEANGAP IHFEFPPDVN YNIPFYISDN SYLQNMEYWD GLYV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13944KRRRRR
23945KRRRRRR
34045RRRRRR
46469LRKRKL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root meristem, late flowers and siliques. {ECO:0000269|PubMed:15567172, ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a regulatory role in auxin/cytokinin signaling during root development. {ECO:0000269|PubMed:15567172}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00098448001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), by salt stress, by indole-3-acetic acid (IAA) and during darkness conditions. Down-regulated by cytokinin. {ECO:0000269|PubMed:15567172, ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892251e-158AC189225.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB011P07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103496.11e-169PREDICTED: homeobox-leucine zipper protein ATHB-53
SwissprotQ9LVR01e-108ATB53_ARATH; Homeobox-leucine zipper protein ATHB-53
TrEMBLA0A078JXM21e-167A0A078JXM2_BRANA; BnaA07g37510D protein
TrEMBLM4D6I41e-167M4D6I4_BRARP; Uncharacterized protein
STRINGBra012093.1-P1e-168(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126021731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66700.11e-111homeobox 53
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]