PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00098397001
Common NameGSBRNA2T00098397001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 722aa    MW: 79188.8 Da    PI: 6.8901
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00098397001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-181876357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  GSBRNA2T00098397001 18 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76
                         5679*****************************************************97 PP
2START1662.6e-521623672205
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 
                          +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++ g a+ra+g+v  +++  v+e+++d++ W + ++++++++v+ ++  g
  GSBRNA2T00098397001 162 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGLEPT-RVAEIVKDRPSWFRECRAVDVMNVLPTAngG 250
                          7899******************************************************.7777777777****************9999* PP

                          EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-.TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
                START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvds.eqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                          +++l +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S+ s +++pp  +++vRae+lpSg+li+p+++g+s +++v+h+dl++ ++
  GSBRNA2T00098397001 251 TIELLYMQLYAPTTLAPpRDFWLLRYTSVLEDGSLVVCERSLKSgPSMPP-VQHFVRAEMLPSGYLIRPCDGGGSIIHIVDHMDLEACSV 339
                          ******************************************98456666.8************************************** PP

                          HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                START 178 hwllrslvksglaegaktwvatlqrqce 205
                          +++lr+l++s  + ++kt++a+l+++++
  GSBRNA2T00098397001 340 PEVLRPLYESPKVLAQKTTMAALRQLKQ 367
                          ************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.241377IPR001356Homeobox domain
SMARTSM003891.2E-151581IPR001356Homeobox domain
SuperFamilySSF466898.98E-171881IPR009057Homeodomain-like
CDDcd000861.01E-161878No hitNo description
PfamPF000464.8E-161976IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-182076IPR009057Homeodomain-like
CDDcd146861.06E-670109No hitNo description
PROSITE profilePS5084824.285152377IPR002913START domain
CDDcd088755.79E-75156369No hitNo description
SMARTSM002341.7E-38161368IPR002913START domain
SuperFamilySSF559617.42E-37161370No hitNo description
Gene3DG3DSA:3.30.530.201.8E-22161344IPR023393START-like domain
PfamPF018528.4E-50162367IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
MAMSYKDGGK MGCMDNGKYV RYTPEQVEAL ERLYHDCPKP SSIRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKEA SRLQAVNRKL TAMNKLLMEE NDRLQKQVSQ LVHENSYFRQ  120
HTPNPSLPAK DTSCESVVTS GQHQVASLNP PRDASPAGLL SIAEETLAEF LSKATGTAVE  180
WVQMPGMKPG PDSIGIIAIS HGCAGVAARA CGLVGLEPTR VAEIVKDRPS WFRECRAVDV  240
MNVLPTANGG TIELLYMQLY APTTLAPPRD FWLLRYTSVL EDGSLVVCER SLKSGPSMPP  300
VQHFVRAEML PSGYLIRPCD GGGSIIHIVD HMDLEACSVP EVLRPLYESP KVLAQKTTMA  360
ALRQLKQIAQ ESSQTNSSVN GWGRRPAALR ALSQRLSRGF NEAVNGFTDE GWSVIGDSMD  420
DVTITVNSSA DKLMGLNLTF SNGFAPVSNV VLCAKASMLL QNVPPAILLR FLREHRSEWA  480
DNNIDAYLAA AVKVGPCSAR VGGFGGQVIL PLAHTIEHEE FMEVIKLEGL GHSPEDAIVP  540
RDIFLLQLCS GMDENAVGTC AELIFAPIDA SFADDAPLLP SGFRIIPLDS TKQEASSPNR  600
TLDLASALEI GPAGTTKAST DQSGNSTCAR SVMTIAFEFG IESHMQEHVA SMARNYVRGI  660
IASVQRVALA LSPSHISSQV GLRTPLGTPE AQTLARWICQ SYRYNIYIYI YIYIYIYMYV  720
S*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed the developing vascular elements and the adaxial portion of cotyledons. Expressed in developing ovules, stamens and carpels. Expressed in procambium and shoot meristem. {ECO:0000269|PubMed:14701930, ECO:0000269|PubMed:15705957}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00098397001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4394490.0AJ439449.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein (ATHB-15 gene).
GenBankAY0605560.0AY060556.1 Arabidopsis thaliana At1g52150/F5F19_21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009107147.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15-like isoform X1
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A078IQ030.0A0A078IQ03_BRANA; BnaC03g69040D protein
STRINGBo3g181130.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20222678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]