PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00098329001
Common NameGSBRNA2T00098329001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 791aa    MW: 86386.4 Da    PI: 6.1591
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00098329001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.66.7e-21124179156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ +++t++q++eLe++F+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  GSBRNA2T00098329001 124 KKRYHRHTPQQIQELESMFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 179
                          688999***********************************************999 PP
2START2001e-623105301206
                          HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
                START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                          ela++a++elvk+a+++e++W ks     +++n +e++++f+++k     +ea+r+sg+v+ ++  lve+l+d+  +W+e+++    + +
  GSBRNA2T00098329001 310 ELALTAMDELVKLAQSDEQLWIKSLdgerDELNHEEYMRTFSSAKPngLVTEASRTSGMVIINSLALVETLMDSD-RWTEMFPcivaRST 398
                          5899*************************************99999999**************************.************** PP

                          EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEE CS
                START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghs 162
                          t++vis g      ga+ql +aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d  ++++  s  v+R  +lpSg++++++sng+s
  GSBRNA2T00098329001 399 TTDVISGGmagtrnGAIQLVNAELQVLSPLVPvRNVNFLRFCKQHAEGVWAVVDVSIDTVRENSGgSTVVIR--RLPSGCVVQDMSNGYS 486
                          ****************************************************************76666666..**************** PP

                          EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          kvtwveh++++++++h l+r+l++sgl +g ++wvatlqrqce+
  GSBRNA2T00098329001 487 KVTWVEHAEYDENQIHHLYRPLLRSGLGFGSQRWVATLQRQCEC 530
                          ******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-20111181IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.3E-22111181IPR009057Homeodomain-like
PROSITE profilePS5007117.281121181IPR001356Homeobox domain
SMARTSM003899.9E-18122185IPR001356Homeobox domain
CDDcd000861.46E-18124181No hitNo description
PfamPF000462.0E-18124179IPR001356Homeobox domain
PROSITE patternPS000270156179IPR017970Homeobox, conserved site
PROSITE profilePS5084844.696301533IPR002913START domain
SuperFamilySSF559611.56E-30305530No hitNo description
CDDcd088758.79E-114305529No hitNo description
SMARTSM002345.4E-38310530IPR002913START domain
PfamPF018525.3E-56310530IPR002913START domain
SuperFamilySSF559615.36E-22550774No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 791 aa     Download sequence    Send to blast
MNFGSLFDNT TGGVPTGLAY GNHTTASTII PGGTMSHIGA ASLFSPPINT KSVYSSSGLS  60
LALEQPERGT SMRNHNGAGG DIFDGSGKNR RSREEEHESR SGSDNVEGIS GEDQDADYNK  120
PPKKKRYHRH TPQQIQELES MFKECPHPDE KQRLELSKRL CLETRQVKFW FQNRRTQMKT  180
QLERHENALL RQENDKLRAE NMSIREAMRN PTCNICGGPA MLGEVSIEEH HLRIENARLK  240
DELDRVFNLT GKFLGHPQNN HTSSLELGVG TNNNGGNFAF PQDFNGGGGC LPPQLPAVVN  300
GVDQRSVLLE LALTAMDELV KLAQSDEQLW IKSLDGERDE LNHEEYMRTF SSAKPNGLVT  360
EASRTSGMVI INSLALVETL MDSDRWTEMF PCIVARSTTT DVISGGMAGT RNGAIQLVNA  420
ELQVLSPLVP VRNVNFLRFC KQHAEGVWAV VDVSIDTVRE NSGGSTVVIR RLPSGCVVQD  480
MSNGYSKVTW VEHAEYDENQ IHHLYRPLLR SGLGFGSQRW VATLQRQCEC LAILMSSSVT  540
SHDDTSISPG GRKSMLKLAQ RMTINFCSGI SAPSVHSWSK LTVGNVDPDV RIMTRKSVDD  600
PSEAPGIVLS AATSVWLPAS PQRLFDFLRN ERMRCEWDIL SNGGPMQEMA HIAKGQDQGN  660
SVSLLRSNPM NANQSSMLIL QETCIDASGA LVVYAPVDIP AMHVVMNGGD SSYVALLPSG  720
FAVLPDGGFN GGSGDGEQRP VGGGSLLTVA FQILVNNLPT AKLTVESVET VNNLISCTVQ  780
KIRTALQCEN *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.66500.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00098329001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111469.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A078IPW00.0A0A078IPW0_BRANA; BnaA09g51780D protein
STRINGBra037355.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]