PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00098213001 | ||||||||
Common Name | GSBRNA2T00098213001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GeBP | ||||||||
Protein Properties | Length: 272aa MW: 30728.9 Da PI: 10.1014 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 82 | 8.6e-26 | 78 | 163 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 ++r+w+eeDe+++L+Gl++++a++g +p++++ +fy+f+ +si k+sk+q+++Kir+LK Kf ++k +++ +++f ls GSBRNA2T00098213001 78 SSRIWNEEDELTVLKGLVEYQAQKGNEPKSNWADFYRFLGGSITGKFSKEQVLTKIRKLKAKFIVSMQK---------GNASKSEAFLLS 158 78*******************************************************************.........556677899999 PP DUF573 93 kkiWg 97 k+iWg GSBRNA2T00098213001 159 KSIWG 163 99997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 5.6E-20 | 79 | 163 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
LFLSLESPNS NLEEKKIRAS LHVRMVNLDF PDGTSPPSHI LRSRKSPRKY ASKPSPPEPA 60 TEHVTKKKKK KKTLASSSSR IWNEEDELTV LKGLVEYQAQ KGNEPKSNWA DFYRFLGGSI 120 TGKFSKEQVL TKIRKLKAKF IVSMQKGNAS KSEAFLLSKS IWGLQDESDQ SANNTKSGEE 180 MANHEPSNNE VTKADFEGND ESWAVRDAFE TMVSKGLSDY QKKLQLEKLM NLGPGKRREL 240 SDEWKELCAE EVKLNIKRFK FSAMLAEAAK W* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 65 | 71 | KKKKKKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.4572 | 0.0 | flower| leaf| microspore| microspore-derived embryo| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the apical meristem and young leaf primordia (PubMed:12535344, PubMed:18162594). Not detected in emerging or mature leaves (PubMed:12535344). Detected in the vascular tissues of cotyledons and leaves, in hydathodes and at the base of flowers and siliques, but not in roots (PubMed:18162594). {ECO:0000269|PubMed:12535344, ECO:0000269|PubMed:18162594}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein, which specifically recognizes the GL1 enhancer sequence (PubMed:12535344). May be involved in leaf initiation (PubMed:12535344). May play redundant roles with GPL1 and GPL2 in cytokinin responses by regulating the transcript levels of type-A ARR response genes (PubMed:18162594). Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). May play a role in plant defense (PubMed:29192025). {ECO:0000269|PubMed:12535344, ECO:0000269|PubMed:21875893, ECO:0000269|PubMed:29192025, ECO:0000305|PubMed:18162594}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00098213001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by KNAT1. Not regulated by gibberellins. {ECO:0000269|PubMed:12535344}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013651864.1 | 0.0 | GLABROUS1 enhancer-binding protein-like | ||||
Swissprot | Q9ASZ1 | 2e-55 | STKLO_ARATH; GLABROUS1 enhancer-binding protein | ||||
TrEMBL | A0A078JXK0 | 0.0 | A0A078JXK0_BRANA; BnaCnng67960D protein (Fragment) | ||||
STRING | Bo6g064770.1 | 1e-175 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6117 | 17 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00270.1 | 4e-57 | DNA-binding storekeeper protein-related transcriptional regulator |
Publications ? help Back to Top | |||
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